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java.lang.Objectorg.biojava.bio.dp.twohead.EmissionCache
Cache for columns of emission probabilities in pair-wise alignment algorithms.
Constructor Summary | |
EmissionCache(Alphabet alpha,
State[] states,
int dsi,
ScoreType scoreType)
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Method Summary | |
void |
clear()
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double[] |
getEmissions(java.util.List symList)
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Methods inherited from class java.lang.Object |
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait |
Constructor Detail |
public EmissionCache(Alphabet alpha, State[] states, int dsi, ScoreType scoreType)
Method Detail |
public final double[] getEmissions(java.util.List symList) throws IllegalSymbolException
IllegalSymbolException
public void clear()
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