Uses of Interface
org.biojava.bio.taxa.Taxon

Packages that use Taxon
org.biojava.bio.taxa Taxonomy object for representing species information. 
 

Uses of Taxon in org.biojava.bio.taxa
 

Classes in org.biojava.bio.taxa that implement Taxon
 class AbstractTaxon
          An abstract implementation of Taxon.
 class SimpleTaxon
          A no-frills implementatation of Taxon.
 class WeakTaxon
          An implementation of Taxon that keeps only weak references to children, but full references to parents.
 

Fields in org.biojava.bio.taxa declared as Taxon
protected  Taxon WeakTaxon.parent
           
protected  Taxon SimpleTaxon.parent
           
 

Methods in org.biojava.bio.taxa that return Taxon
 Taxon WeakTaxonFactory.getRoot()
           
 Taxon WeakTaxonFactory.importTaxon(Taxon taxon)
           
 Taxon WeakTaxonFactory.createTaxon(java.lang.String scientificName, java.lang.String commonName)
           
 Taxon WeakTaxonFactory.addChild(Taxon parent, Taxon child)
           
 Taxon WeakTaxonFactory.removeChild(Taxon parent, Taxon child)
           
 Taxon WeakTaxonFactory.search(java.lang.Object id)
           
 Taxon Taxon.getParent()
          The parent of this Taxon.
 Taxon WeakTaxon.getParent()
           
 Taxon TaxonParser.parse(TaxonFactory taxonFactory, java.lang.String taxonString)
          Convert a stringified Taxon into a Taxon instance.
 Taxon SimpleTaxon.getParent()
           
 Taxon TaxonFactory.importTaxon(Taxon source)
          Import a Taxon and all its children into the implementation provided by this factory.
 Taxon TaxonFactory.getRoot()
          Retrieve the root upon which all rooted Taxon that this factory knows about are rooted.
 Taxon TaxonFactory.search(java.lang.Object id)
          Retrieve a Taxon that matches some ID.
 Taxon TaxonFactory.createTaxon(java.lang.String scientificName, java.lang.String commonName)
          Create a new orphan Taxon with a given scientific and common name.
 Taxon TaxonFactory.addChild(Taxon parent, Taxon child)
          Add a taxon as a child to a parent.
 Taxon TaxonFactory.removeChild(Taxon parent, Taxon child)
          Remove a Taxon as a child to this one.
 Taxon SimpleTaxonFactory.getRoot()
           
 Taxon SimpleTaxonFactory.importTaxon(Taxon taxon)
           
 Taxon SimpleTaxonFactory.createTaxon(java.lang.String scientificName, java.lang.String commonName)
           
 Taxon SimpleTaxonFactory.addChild(Taxon parent, Taxon child)
           
 Taxon SimpleTaxonFactory.removeChild(Taxon parent, Taxon child)
           
 Taxon SimpleTaxonFactory.search(java.lang.Object id)
           
 Taxon EbiFormat.parse(TaxonFactory taxonFactory, java.lang.String taxonString)
           
 

Methods in org.biojava.bio.taxa with parameters of type Taxon
 Taxon WeakTaxonFactory.importTaxon(Taxon taxon)
           
 Taxon WeakTaxonFactory.addChild(Taxon parent, Taxon child)
           
 Taxon WeakTaxonFactory.removeChild(Taxon parent, Taxon child)
           
 java.lang.String TaxonParser.serialize(Taxon taxon)
          Convert a Taxon into a stringified representation.
 Taxon TaxonFactory.importTaxon(Taxon source)
          Import a Taxon and all its children into the implementation provided by this factory.
 Taxon TaxonFactory.addChild(Taxon parent, Taxon child)
          Add a taxon as a child to a parent.
 Taxon TaxonFactory.removeChild(Taxon parent, Taxon child)
          Remove a Taxon as a child to this one.
 Taxon SimpleTaxonFactory.importTaxon(Taxon taxon)
           
 Taxon SimpleTaxonFactory.addChild(Taxon parent, Taxon child)
           
 Taxon SimpleTaxonFactory.removeChild(Taxon parent, Taxon child)
           
 java.lang.String EbiFormat.serialize(Taxon taxon)