|
|||||||||||
PREV PACKAGE NEXT PACKAGE | FRAMES NO FRAMES |
See:
Description
Interface Summary | |
ColourCommand | Interface for specifying whether a particular pair of residues/bases should be coloured. |
DatabaseURLGenerator | Takes a database ID and some configuration properties ( such as base URL ) and returns either a URL or a full anchor tag. |
URLGeneratorFactory | Interface for a factory method to return a list of
0, 1 or more DatabaseURLGenerator instances. |
Class Summary | |
AbstractAlignmentStyler |
Abstract implementation of AlignmentStyler , contains
utility methods for generating a set of HTML styles from a list of
RGB colours. |
AlignmentMarker | Class to do simple HTML colouring of sequence alignments. |
Blast2HTMLHandler | Takes a SAX event stream and a HTMLRenderer to produce a HTML Blast like program report. |
DefaultURLGeneratorFactory | A simple default URLGeneratorFactory which returns
a single NcbiDatabaseURLGenerator instance. |
EbiDatabaseURLGenerator | Simple URL generator for EMBL at the EBI. |
HTMLRenderer | Renders HTML version of blast-like output. |
NcbiDatabaseURLGenerator | Simple URL generator for Entrez at the NCBI. |
SimpleAlignmentStyler | Simple implementation for specifying markup styles. |
Code for generating HTML reports from blast output
|
|||||||||||
PREV PACKAGE NEXT PACKAGE | FRAMES NO FRAMES |