org.biojava.bio.seq.db
Class GenpeptSequenceDB

java.lang.Object
  extended byorg.biojava.bio.seq.db.GenpeptSequenceDB

public class GenpeptSequenceDB
extends java.lang.Object

Author:
Lei Lai, Matthew Pocock

Constructor Summary
GenpeptSequenceDB()
           
 
Method Summary
 boolean checkException()
           
 boolean checkIOException()
           
protected  java.net.URL getAddress(java.lang.String id)
           
protected  java.net.URL getAddress(java.lang.String id, java.lang.String format)
           
protected  Alphabet getAlphabet()
           
 java.lang.String getName()
           
 Sequence getSequence(java.lang.String id)
           
protected  SequenceFormat getSequenceFormat()
           
 
Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
 

Constructor Detail

GenpeptSequenceDB

public GenpeptSequenceDB()
Method Detail

getSequenceFormat

protected SequenceFormat getSequenceFormat()

getAlphabet

protected Alphabet getAlphabet()

getAddress

protected java.net.URL getAddress(java.lang.String id)
                           throws java.net.MalformedURLException
Throws:
java.net.MalformedURLException

getAddress

protected java.net.URL getAddress(java.lang.String id,
                                  java.lang.String format)
                           throws java.net.MalformedURLException
Throws:
java.net.MalformedURLException

getName

public java.lang.String getName()

getSequence

public Sequence getSequence(java.lang.String id)
                     throws BioException
Throws:
BioException

checkIOException

public boolean checkIOException()

checkException

public boolean checkException()