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Packages that use ChromatogramGraphic.Option | |
org.biojava.bio.chromatogram.graphic | Tools for displaying chromatograms. |
Uses of ChromatogramGraphic.Option in org.biojava.bio.chromatogram.graphic |
Fields in org.biojava.bio.chromatogram.graphic declared as ChromatogramGraphic.Option | |
static ChromatogramGraphic.Option |
ChromatogramGraphic.Option.DRAW_CALL_A
Option indicating whether to fill in the callboxes for calls of nucleotide A. |
static ChromatogramGraphic.Option |
ChromatogramGraphic.Option.DRAW_CALL_C
Option indicating whether to fill in the callboxes for calls of nucleotide C. |
static ChromatogramGraphic.Option |
ChromatogramGraphic.Option.DRAW_CALL_G
Option indicating whether to fill in the callboxes for calls of nucleotide G. |
static ChromatogramGraphic.Option |
ChromatogramGraphic.Option.DRAW_CALL_T
Option indicating whether to fill in the callboxes for calls of nucleotide T. |
static ChromatogramGraphic.Option |
ChromatogramGraphic.Option.DRAW_CALL_OTHER
Option indicating whether to fill in the callboxes for non-base calls (gaps, ambiguities). |
static ChromatogramGraphic.Option |
ChromatogramGraphic.Option.DRAW_TRACE_A
Option indicating whether to draw the chromatogram trace for nucleotide A. |
static ChromatogramGraphic.Option |
ChromatogramGraphic.Option.DRAW_TRACE_C
Option indicating whether to draw the chromatogram trace for nucleotide C. |
static ChromatogramGraphic.Option |
ChromatogramGraphic.Option.DRAW_TRACE_G
Option indicating whether to draw the chromatogram trace for nucleotide G. |
static ChromatogramGraphic.Option |
ChromatogramGraphic.Option.DRAW_TRACE_T
Option indicating whether to draw the chromatogram trace for nucleotide T. |
static ChromatogramGraphic.Option |
ChromatogramGraphic.Option.DRAW_CALL_SEPARATORS
Option indicating whether to draw vertical lines separating the calls. |
static ChromatogramGraphic.Option |
ChromatogramGraphic.Option.SEPARATOR_COLOR
Option indicating the color that the call separators should be. |
static ChromatogramGraphic.Option |
ChromatogramGraphic.Option.WIDTH_IS_AUTHORITATIVE
Option indicating whether width or horizontal scale is the authoritative measure. |
static ChromatogramGraphic.Option |
ChromatogramGraphic.Option.HEIGHT_IS_AUTHORITATIVE
Option indicating whether height or vertical scale is the authoritative measure. |
static ChromatogramGraphic.Option |
ChromatogramGraphic.Option.USE_CUSTOM_STROKE
Option indicating whether to use custom strokes when drawing traces and separators. |
static ChromatogramGraphic.Option |
ChromatogramGraphic.Option.TRACE_STROKE
Option providing the the stroke to use for drawing the chromatogram traces. |
static ChromatogramGraphic.Option |
ChromatogramGraphic.Option.SEPARATOR_STROKE
Option providing the the stroke to use for drawing call separators. |
static ChromatogramGraphic.Option |
ChromatogramGraphic.Option.USE_PER_SHAPE_TRANSFORM
Option indicating whether to apply scaling and translation transforms to each shape individually or to apply a single transform to the graphics context. |
static ChromatogramGraphic.Option |
ChromatogramGraphic.Option.SUBPATH_LENGTH
To improve performance, the drawing objects for the chromatogram traces are precomputed. |
static ChromatogramGraphic.Option |
ChromatogramGraphic.Option.FROM_TRACE_SAMPLE
Option indicating the lowest (leftmost) trace sample that should be drawn. |
static ChromatogramGraphic.Option |
ChromatogramGraphic.Option.TO_TRACE_SAMPLE
Option indicating the highest (rightmost) trace sample that should be drawn. |
Methods in org.biojava.bio.chromatogram.graphic that return ChromatogramGraphic.Option | |
static ChromatogramGraphic.Option |
ChromatogramGraphic.Option.lookup(java.lang.String desc)
Looks up an Option instance based on its
string description. |
Methods in org.biojava.bio.chromatogram.graphic with parameters of type ChromatogramGraphic.Option | |
void |
ChromatogramGraphic.setOption(ChromatogramGraphic.Option opt,
java.lang.Object value)
Sets a new value for the specified option. |
java.lang.Object |
ChromatogramGraphic.getOption(ChromatogramGraphic.Option opt)
Returns the current value for the specified option. |
boolean |
ChromatogramGraphic.optionIsTrue(ChromatogramGraphic.Option opt)
Helper method for converting a Boolean -valued
option into a boolean primitive. |
float |
ChromatogramGraphic.getFloatOption(ChromatogramGraphic.Option opt)
Helper method for converting a Number -valued
option into a float primitive. |
int |
ChromatogramGraphic.getIntOption(ChromatogramGraphic.Option opt)
Helper method for converting a Number -valued
option into an int primitive. |
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