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java.lang.Objectorg.biojava.bio.dp.twohead.PairDPMatrix
Storage structure for intermediate values from a pairwise dynamic programming run.
Constructor Summary | |
PairDPMatrix(DP dp,
SymbolList seq0,
SymbolList seq1)
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Method Summary | |
double |
getCell(int[] indxs)
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double |
getScore()
|
MarkovModel |
model()
|
State[] |
states()
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SymbolList[] |
symList()
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Methods inherited from class java.lang.Object |
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait |
Constructor Detail |
public PairDPMatrix(DP dp, SymbolList seq0, SymbolList seq1)
Method Detail |
public State[] states()
states
in interface DPMatrix
public MarkovModel model()
model
in interface DPMatrix
public SymbolList[] symList()
symList
in interface DPMatrix
public double getScore()
getScore
in interface DPMatrix
public double getCell(int[] indxs)
getCell
in interface DPMatrix
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