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ARAlignment is an interface that defines methods for adding and removing seqeunces from an Alignment.
Nested Class Summary |
Nested classes inherited from class org.biojava.bio.symbol.Alignment |
Alignment.SymbolListIterator |
Nested classes inherited from class org.biojava.bio.symbol.SymbolList |
SymbolList.EmptySymbolList |
Field Summary | |
static ChangeType |
ADD_LABEL
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static ChangeType |
REMOVE_LABEL
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Fields inherited from interface org.biojava.bio.symbol.Alignment |
CONTENT |
Fields inherited from interface org.biojava.bio.symbol.SymbolList |
EDIT, EMPTY_LIST |
Method Summary | |
void |
addSequence(AlignmentElement ae)
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void |
removeSequence(java.lang.Object label)
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Methods inherited from interface org.biojava.bio.symbol.Alignment |
getLabels, subAlignment, symbolAt, symbolListForLabel, symbolListIterator |
Methods inherited from interface org.biojava.bio.symbol.SymbolList |
edit, getAlphabet, iterator, length, seqString, subList, subStr, symbolAt, toList |
Methods inherited from interface org.biojava.utils.Changeable |
addChangeListener, addChangeListener, isUnchanging, removeChangeListener, removeChangeListener |
Field Detail |
public static final ChangeType ADD_LABEL
public static final ChangeType REMOVE_LABEL
Method Detail |
public void addSequence(AlignmentElement ae) throws ChangeVetoException, BioException
ChangeVetoException
BioException
public void removeSequence(java.lang.Object label) throws ChangeVetoException
ChangeVetoException
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