org.biojava.bio.seq
Class FeatureFilter.OverlapsLocation
java.lang.Object
org.biojava.bio.seq.FeatureFilter.OverlapsLocation
- All Implemented Interfaces:
- FeatureFilter, OptimizableFilter, java.io.Serializable
- Enclosing class:
- FeatureFilter
- public static final class FeatureFilter.OverlapsLocation
- extends java.lang.Object
- implements OptimizableFilter
A filter that returns all features overlapping a location.
- Since:
- 1.0
- Author:
- Matthew Pocock
- See Also:
- Serialized Form
Nested classes inherited from class org.biojava.bio.seq.FeatureFilter |
FeatureFilter.And, FeatureFilter.AnnotationContains, FeatureFilter.ByAncestor, FeatureFilter.ByAnnotation, FeatureFilter.ByAnnotationType, FeatureFilter.ByChild, FeatureFilter.ByClass, FeatureFilter.ByComponentName, FeatureFilter.ByDescendant, FeatureFilter.ByFeature, FeatureFilter.ByPairwiseScore, FeatureFilter.ByParent, FeatureFilter.BySequenceName, FeatureFilter.BySource, FeatureFilter.ByType, FeatureFilter.ContainedByLocation, FeatureFilter.FrameFilter, FeatureFilter.HasAnnotation, FeatureFilter.Not, FeatureFilter.OnlyChildren, FeatureFilter.OnlyDescendants, FeatureFilter.Or, FeatureFilter.OverlapsLocation, FeatureFilter.ShadowContainedByLocation, FeatureFilter.ShadowOverlapsLocation, FeatureFilter.StrandFilter |
Method Summary |
boolean |
accept(Feature f)
Returns true if the feature overlaps this filter's location. |
boolean |
equals(java.lang.Object o)
|
Location |
getLocation()
|
int |
hashCode()
|
boolean |
isDisjoint(FeatureFilter filt)
Returns true if this filter is disjoint from filt - that is, there is no
Feature that is accepted by both filters. |
boolean |
isProperSubset(FeatureFilter sup)
Returns true if this filter is a proper subset of sup - that is, for every
feature that matches this, it also matches sup. |
java.lang.String |
toString()
|
Methods inherited from class java.lang.Object |
clone, finalize, getClass, notify, notifyAll, wait, wait, wait |
FeatureFilter.OverlapsLocation
public FeatureFilter.OverlapsLocation(Location loc)
- Creates a filter that returns everything overlapping loc.
- Parameters:
loc
- the location that will overlap the accepted features
getLocation
public Location getLocation()
accept
public boolean accept(Feature f)
- Returns true if the feature overlaps this filter's location.
- Specified by:
accept
in interface FeatureFilter
- Parameters:
f
- the Feature to evaluate
- Returns:
- true if this feature is to be selected in, or false if it is to be ignored
equals
public boolean equals(java.lang.Object o)
hashCode
public int hashCode()
isProperSubset
public boolean isProperSubset(FeatureFilter sup)
- Description copied from interface:
OptimizableFilter
- Returns true if this filter is a proper subset of sup - that is, for every
feature that matches this, it also matches sup. The empty filter is a
proper subset of all filters. All filters are a proper subset of the all
filter. All filters are proper subsets of themselves.
- Specified by:
isProperSubset
in interface OptimizableFilter
- Parameters:
sup
- the potential super set
- Returns:
- true if sup contains all features contained by this filter
isDisjoint
public boolean isDisjoint(FeatureFilter filt)
- Description copied from interface:
OptimizableFilter
- Returns true if this filter is disjoint from filt - that is, there is no
Feature that is accepted by both filters. The empty filter is disjoint from
all other filters. The all filter is disjoint from none.
- Specified by:
isDisjoint
in interface OptimizableFilter
toString
public java.lang.String toString()