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Packages that use org.biojava.bio.program.blast2html | |
org.biojava.bio.program.blast2html | Code for generating HTML reports from blast output |
Classes in org.biojava.bio.program.blast2html used by org.biojava.bio.program.blast2html | |
AbstractAlignmentStyler
Abstract implementation of AlignmentStyler , contains
utility methods for generating a set of HTML styles from a list of
RGB colours. |
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AlignmentMarker
Class to do simple HTML colouring of sequence alignments. |
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ColourCommand
Interface for specifying whether a particular pair of residues/bases should be coloured. |
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DatabaseURLGenerator
Takes a database ID and some configuration properties ( such as base URL ) and returns either a URL or a full anchor tag. |
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HTMLRenderer
Renders HTML version of blast-like output. |
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URLGeneratorFactory
Interface for a factory method to return a list of 0, 1 or more DatabaseURLGenerator instances. |
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