Uses of Class
org.biojava.bio.seq.io.agave.StAXFeatureHandler

Packages that use StAXFeatureHandler
org.biojava.bio.seq.io.agave Classes for converting between AGAVE XML and BioJava objects. 
 

Uses of StAXFeatureHandler in org.biojava.bio.seq.io.agave
 

Subclasses of StAXFeatureHandler in org.biojava.bio.seq.io.agave
 class AGAVEAssemblyHandler
           
 class AGAVEBioSeqHandler
          Handles the AGAVE <bio_sequence> element
 class AGAVEBioSequenceHandler
          Handles the AGAVE <bio_sequence> element
 class AGAVECdsHandler
          Handles the AGAVE <cds> element
 class AGAVEChromosomeHandler
          Handles the AGAVE <chromosome> element
 class AGAVEClassificationHandler
           
 class AGAVECompResultHandler
           
 class AGAVEComputationHandler
           
 class AGAVEContigHandler
          Handles the AGAVE <contig> element
 class AGAVEEvidenceHandler
           
 class AGAVEFragmentOrderHandler
           
 class AGAVEFragmentOrientationHandler
           
 class AGAVEGeneHandler
           
 class AGAVEHandler
          Handles the root AGAVE element modified for agave format
 class AGAVEMrnaHandler
          Handles the AGAVE <mrna> element
 class AGAVEPredictedProteinHandler
          Handles the AGAVE <predicted_protein> element
 class AGAVEQueryRegionPropHandler
           
 class AGAVEResultGroupHandler
           
 class AGAVESeqFeatureHandler
          seq_feature
 class AGAVESeqMapHandler
          sequence_map
 class AGAVETranscriptHandler
          transcript
 class AGAVEUnorderedFragmentsHandler
          unordered_fragments
 

Fields in org.biojava.bio.seq.io.agave declared as StAXFeatureHandler
protected  StAXFeatureHandler StAXPropertyHandler.staxenv
           
protected  StAXFeatureHandler StAXFeatureHandler.staxenv
           
 

Methods in org.biojava.bio.seq.io.agave with parameters of type StAXFeatureHandler
 StAXContentHandler StAXHandlerFactory.getHandler(StAXFeatureHandler staxenv)
          Return a suitable StAX content handler.