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Packages that use GFFRecordFilter | |
org.biojava.bio.program.gff | GFF manipulation. |
Uses of GFFRecordFilter in org.biojava.bio.program.gff |
Classes in org.biojava.bio.program.gff that implement GFFRecordFilter | |
static class |
GFFRecordFilter.AcceptAll
Implementation of GFFRecordFilter that accepts everything. |
static class |
GFFRecordFilter.FeatureFilter
Implementation of GFFRecordFilter that accepts records based upon the feature field. |
static class |
GFFRecordFilter.FrameFilter
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static class |
GFFRecordFilter.NotFilter
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static class |
GFFRecordFilter.SequenceFilter
Implementation of GFFRecordFilter that accepts records based upon the sequence name. |
static class |
GFFRecordFilter.SourceFilter
Implementation of GFFRecordFilter that accepts records based upon the source field. |
static class |
GFFRecordFilter.StrandFilter
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Fields in org.biojava.bio.program.gff declared as GFFRecordFilter | |
static GFFRecordFilter |
GFFRecordFilter.ACCEPT_ALL
A GFFRecordFilter that accepts everything. |
Methods in org.biojava.bio.program.gff that return GFFRecordFilter | |
GFFRecordFilter |
GFFRecordFilter.NotFilter.getFilter()
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Methods in org.biojava.bio.program.gff with parameters of type GFFRecordFilter | |
void |
GFFRecordFilter.NotFilter.setFilter(GFFRecordFilter filter)
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static GFFEntrySet |
GFFTools.readGFF(java.lang.String fileName,
GFFRecordFilter recFilt)
Reads a GFFEntrySet from a file with the specified filter |
static GFFEntrySet |
GFFTools.readGFF(java.io.BufferedReader gffIn,
GFFRecordFilter recFilt)
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GFFEntrySet |
GFFEntrySet.filter(GFFRecordFilter filter)
Filter this entry set into another set. |
Constructors in org.biojava.bio.program.gff with parameters of type GFFRecordFilter | |
GFFRecordFilter.NotFilter(GFFRecordFilter filter)
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GFFFilterer(GFFDocumentHandler handler,
GFFRecordFilter filter)
Create a new GFFFilterer that will forward to handler everything that filter accepts. |
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