Uses of Interface
org.biojava.bio.symbol.GappedSymbolList

Packages that use GappedSymbolList
org.biojava.bio.alignment Implementation of the Alignment interface. 
org.biojava.bio.seq Classes and interfaces for defining biological sequences and informatics objects. 
org.biojava.bio.symbol Representation of the Symbols that make up a sequence, and locations within them. 
 

Uses of GappedSymbolList in org.biojava.bio.alignment
 

Methods in org.biojava.bio.alignment with parameters of type GappedSymbolList
 void FlexibleAlignment.removeGaps(GappedSymbolList seq, int start, int length)
          because there is a bug in GappedSymbolList
 

Uses of GappedSymbolList in org.biojava.bio.seq
 

Subinterfaces of GappedSymbolList in org.biojava.bio.seq
 interface GappedSequence
          Extension of GappedSymbolList which also projects features into the gapped coordinate system.
 

Classes in org.biojava.bio.seq that implement GappedSymbolList
 class SimpleGappedSequence
          Simple implementation of GappedSequence.
 

Uses of GappedSymbolList in org.biojava.bio.symbol
 

Classes in org.biojava.bio.symbol that implement GappedSymbolList
 class SimpleGappedSymbolList
          This implementation of GappedSymbolList wraps a SymbolList, allowing you to insert gaps.