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Packages that use StAXPropertyHandler | |
org.biojava.bio.seq.io.agave | Classes for converting between AGAVE XML and BioJava objects. |
Uses of StAXPropertyHandler in org.biojava.bio.seq.io.agave |
Subclasses of StAXPropertyHandler in org.biojava.bio.seq.io.agave | |
class |
AGAVEAltIdsPropHandler
Deals with alternate sequence IDs |
class |
AGAVEAnnotationsHandler
|
class |
AGAVEDbIdPropHandler
Deals with database crossreferences |
class |
AGAVEDescPropHandler
Deals with database crossreferences |
class |
AGAVEElementIdPropHandler
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class |
AGAVEExonsPropHandler
|
class |
AGAVEIdAliasPropHandler
|
class |
AGAVEKeywordPropHandler
Deals with AGAVE keywords |
class |
AGAVEMapLocationPropHandler
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class |
AGAVEMapPositionPropHandler
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class |
AGAVEMatchAlignPropHandler
Deals with match_align |
class |
AGAVEMatchDescPropHandler
Deals with match_desc |
class |
AGAVEMatchRegionPropHandler
Deals with match_region |
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AGAVENotePropHandler
Deals with note |
class |
AGAVEQualifierPropHandler
|
class |
AGAVERelatedAnnotPropHandler
|
class |
AGAVEResultPropertyPropHandler
|
class |
AGAVESciPropertyPropHandler
sci_property |
class |
AGAVESeqLocationPropHandler
seq_location |
class |
AGAVESeqPropHandler
* Deals with sequence code * * @author Hanning Ni Doubletwist Inc * @author Greg Cox |
class |
AGAVEViewPropHandler
Moves view attributes into annotation properties. |
class |
AGAVEXrefPropHandler
handle AGAVE xref |
class |
AGAVEXrefPropPropHandler
xref_property |
class |
AGAVEXrefsPropHandler
Deals with database crossreferences (xrefs) |
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