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A database of sequences.
This may have several implementations with rich behaviour, but basicaly most of the time you will just use the interface methods to do stuff. A sequence database contains a finite number of sequences stored under unique keys.
Method Summary | |
java.lang.String |
getName()
Get the name of this sequence database. |
Sequence |
getSequence(java.lang.String id)
Retrieve a single sequence by its id. |
java.util.Set |
ids()
Get an imutable set of all of the IDs in the database. |
SequenceIterator |
sequenceIterator()
Returns a SequenceTterator over all sequences in the database. |
Method Detail |
public java.lang.String getName()
public Sequence getSequence(java.lang.String id) throws BioException
the
- id to retrieve bypublic java.util.Set ids()
public SequenceIterator sequenceIterator()
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