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SUMMARY: INNER | FIELD | CONSTR | METHOD | DETAIL: FIELD | CONSTR | METHOD |
java.lang.Object | +--org.biojava.bio.dp.PairDPMatrix
Storage structure for intermediate values from a pairwise dynamic programming run.
Constructor Summary | |
PairDPMatrix(DP dp,
SymbolList seq0,
SymbolList seq1)
|
Method Summary | |
double |
getCell(int[] indxs)
|
double |
getScore()
|
MarkovModel |
model()
|
SymbolList[] |
resList()
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State[] |
states()
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Methods inherited from class java.lang.Object |
clone,
equals,
finalize,
getClass,
hashCode,
notify,
notifyAll,
toString,
wait,
wait,
wait |
Constructor Detail |
public PairDPMatrix(DP dp, SymbolList seq0, SymbolList seq1)
Method Detail |
public State[] states()
public MarkovModel model()
public SymbolList[] resList()
public double getScore()
public double getCell(int[] indxs)
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