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Hierarchy For Package org.biojava.bio.symbol
Package Hierarchies:
All Packages
Class Hierarchy
class java.lang.Object
class org.biojava.bio.symbol.
AbstractAlphabet
(implements org.biojava.bio.symbol.
FiniteAlphabet
)
class org.biojava.bio.symbol.
SimpleAlphabet
(implements java.io.Serializable)
class org.biojava.bio.symbol.
AbstractSymbolList
(implements org.biojava.bio.symbol.
SymbolList
)
class org.biojava.bio.symbol.
GappedSymbolList
(implements java.io.Serializable)
class org.biojava.bio.symbol.
OrderNSymbolList
(implements java.io.Serializable)
class org.biojava.bio.symbol.
ReverseSymbolList
(implements java.io.Serializable)
class org.biojava.bio.symbol.
SimpleAlignment
(implements org.biojava.bio.symbol.
Alignment
, java.io.Serializable)
class org.biojava.bio.symbol.
SimpleSymbolList
(implements java.io.Serializable)
class org.biojava.bio.symbol.
TranslatedSymbolList
(implements org.biojava.bio.symbol.
SymbolList
)
class org.biojava.bio.symbol.
WindowedSymbolList
(implements java.io.Serializable)
class org.biojava.bio.symbol.
AllTokensAlphabet
(implements org.biojava.bio.symbol.
FiniteAlphabet
, java.io.Serializable)
class org.biojava.bio.symbol.
Alphabet.EmptyAlphabet
(implements org.biojava.bio.symbol.
FiniteAlphabet
, java.io.Serializable)
class org.biojava.bio.symbol.
AlphabetManager
class org.biojava.bio.symbol.
AlphabetManager.ListWrapper
class org.biojava.bio.symbol.
CompoundLocation
(implements org.biojava.bio.symbol.
Location
, java.io.Serializable)
class org.biojava.bio.symbol.
CrossProductSymbolNameParser
(implements java.io.Serializable, org.biojava.bio.symbol.
SymbolParser
)
class org.biojava.bio.symbol.
DoubleAlphabet
(implements org.biojava.bio.symbol.
Alphabet
, java.io.Serializable)
class org.biojava.bio.symbol.
DoubleAlphabet.DoubleSymbol
(implements org.biojava.bio.symbol.
AtomicSymbol
, java.io.Serializable)
class org.biojava.bio.symbol.
FixedWidthParser
(implements java.io.Serializable, org.biojava.bio.symbol.
SymbolParser
)
class org.biojava.bio.symbol.
IntegerAlphabet
(implements org.biojava.bio.symbol.
Alphabet
, java.io.Serializable)
class org.biojava.bio.symbol.
IntegerAlphabet.IntegerSymbol
(implements org.biojava.bio.symbol.
AtomicSymbol
, java.io.Serializable)
class org.biojava.bio.symbol.
Location.EmptyLocation
(implements org.biojava.bio.symbol.
Location
, java.io.Serializable)
class org.biojava.bio.symbol.
Location.LocationComparator
(implements java.util.Comparator, java.io.Serializable)
class org.biojava.bio.symbol.
NameParser
(implements java.io.Serializable, org.biojava.bio.symbol.
SymbolParser
)
class org.biojava.bio.symbol.
PointLocation
(implements org.biojava.bio.symbol.
Location
, java.io.Serializable)
class org.biojava.bio.symbol.
RangeLocation
(implements org.biojava.bio.symbol.
Location
, java.io.Serializable)
class org.biojava.bio.symbol.
SimpleAtomicSymbol
(implements org.biojava.bio.symbol.
AtomicSymbol
)
class org.biojava.bio.symbol.
SimpleSymbol
(implements java.io.Serializable, org.biojava.bio.symbol.
Symbol
)
class org.biojava.bio.symbol.
SimpleTranslationTable
(implements java.io.Serializable, org.biojava.bio.symbol.
TranslationTable
)
class org.biojava.bio.symbol.
SingletonAlphabet
(implements org.biojava.bio.symbol.
FiniteAlphabet
, java.io.Serializable)
class org.biojava.bio.symbol.
SuffixTree
(implements java.io.Serializable)
class org.biojava.bio.symbol.
SuffixTree.SuffixNode
(implements java.io.Serializable)
class org.biojava.bio.symbol.
SymbolList.EmptySymbolList
(implements java.io.Serializable, org.biojava.bio.symbol.
SymbolList
)
class java.lang.Throwable (implements java.io.Serializable)
class java.lang.Exception
class org.biojava.bio.
BioException
class org.biojava.bio.symbol.
IllegalAlphabetException
class org.biojava.bio.symbol.
IllegalSymbolException
class org.biojava.bio.symbol.
TokenParser
(implements java.io.Serializable, org.biojava.bio.symbol.
SymbolParser
)
Interface Hierarchy
interface org.biojava.bio.
Annotatable
interface org.biojava.bio.symbol.
Alphabet
interface org.biojava.bio.symbol.
CrossProductAlphabet
interface org.biojava.bio.symbol.
FiniteAlphabet
interface org.biojava.bio.symbol.
Symbol
interface org.biojava.bio.symbol.
AtomicSymbol
interface org.biojava.bio.symbol.
CrossProductSymbol
interface org.biojava.bio.symbol.
Location
interface org.biojava.bio.symbol.
SymbolList
interface org.biojava.bio.symbol.
Alignment
interface org.biojava.bio.symbol.
SymbolParser
interface org.biojava.bio.symbol.
TranslationTable
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