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See:
Description
Interface Summary | |
IDMaker | Interface for objects that define how to make an ID for a sequence. |
SequenceDB | A database of sequences. |
SequenceDBInstallation | A SequenceDBInstallation has the functionality of a factory for SequenceDB objects and additionally manages the SequenceDB objects created by itself such that the minimum number of SequenceDB objects is created by a particular SequenceDBInstallation object. |
Class Summary | |
AnnotatedSequenceDB | SequenceDB implementation which lazily applies a SequenceAnnotator to sequences retrieved from a SequenceDB. |
CachingSequenceDB | SequenceDB implementation that caches the results of another SequenceDB. |
HashSequenceDB | An implementation of SequenceDB that uses an underlying HashMap to store the sequence objects. |
IDMaker.ByName | |
IDMaker.ByURN | |
IndexedSequenceDB | This class reads in a file or a set of files containing sequence data. |
SimpleSequenceDBInstallation | this class is an implementation of interface SequenceDBInstallation that manages a set of HashSequenceDB objects. |
Collections of biological sequence data. This package contains
SequenceDB
, a simple interface for objects which
allow sequences to be retrieved by name, and several useful
SequenceDB implementations.
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