Package org.biojava.bio.seq.db

Collections of biological sequence data.

See:
          Description

Interface Summary
IDMaker Interface for objects that define how to make an ID for a sequence.
SequenceDB A database of sequences.
SequenceDBInstallation A SequenceDBInstallation has the functionality of a factory for SequenceDB objects and additionally manages the SequenceDB objects created by itself such that the minimum number of SequenceDB objects is created by a particular SequenceDBInstallation object.
 

Class Summary
AnnotatedSequenceDB SequenceDB implementation which lazily applies a SequenceAnnotator to sequences retrieved from a SequenceDB.
CachingSequenceDB SequenceDB implementation that caches the results of another SequenceDB.
HashSequenceDB An implementation of SequenceDB that uses an underlying HashMap to store the sequence objects.
IDMaker.ByName  
IDMaker.ByURN  
IndexedSequenceDB This class reads in a file or a set of files containing sequence data.
SimpleSequenceDBInstallation this class is an implementation of interface SequenceDBInstallation that manages a set of HashSequenceDB objects.
 

Package org.biojava.bio.seq.db Description

Collections of biological sequence data. This package contains SequenceDB, a simple interface for objects which allow sequences to be retrieved by name, and several useful SequenceDB implementations.