org.biojava.bio.dp
Interfaces 
DotState
DPMatrix
EmissionState
MarkovModel
ModelInState
ModelTrainer
State
StatePath
StoppingCriteria
Trainable
TrainingAlgorithm
TransitionListener
TransitionTrainer
WeightMatrix
Classes 
AbstractTrainer
BaumWelchSampler
BaumWelchTrainer
DP
DP.ReverseIterator
DPFactory
MagicalState
ModelChangeEvent
ModelView
PairDPMatrix
PairwiseDP
ProfileHMM
SimpleDotState
SimpleEmissionState
SimpleMarkovModel
SimpleModelInState
SimpleModelTrainer
SimpleStatePath
SimpleTransitionTrainer
SimpleWeightMatrix
TrainerTransition
Transition
TransitionEvent
WeightMatrixAnnotator
WMAsMM
XmlMarkovModel
Exceptions 
IllegalTransitionException
ModelVetoException