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EMBOSS: cutseq |
% cutseq gatta.seq gatta2.seq -from=10 -to=12
To remove the first 20 bases from 'hatta.seq' and write it to 'jsh.seq':
% cutseq -seq=hatta.seq -from=1 -to=20 -out=jsh.seq
Mandatory qualifiers: [-sequence] sequence Sequence USA [-outseq] seqout Output sequence USA -from integer This is the start position (inclusive) of the section of the sequence that you wish to remove. -to integer This is the end position (inclusive) of the section of the sequence that you wish to remove. Optional qualifiers: (none) Advanced qualifiers: (none) |
Mandatory qualifiers | Allowed values | Default | |
---|---|---|---|
[-sequence] (Parameter 1) |
Sequence USA | Readable sequence | Required |
[-outseq] (Parameter 2) |
Output sequence USA | Writeable sequence | <sequence>.format |
-from | This is the start position (inclusive) of the section of the sequence that you wish to remove. | Any integer value | Start of sequence (0) |
-to | This is the end position (inclusive) of the section of the sequence that you wish to remove. | Any integer value | End of sequence (0) |
Optional qualifiers | Allowed values | Default | |
(none) | |||
Advanced qualifiers | Allowed values | Default | |
(none) |
None.
See also
Program name | Description |
---|---|
descseq | Alter the name or description of a sequence |
extractseq | Extract regions from a sequence |
maskfeat | Mask off features of a sequence |
maskseq | Mask off regions of a sequence |
megamerger | Merge two large overlapping nucleic acid sequences |
merger | Merge two overlapping nucleic acid sequences |
newseq | Type in a short new sequence |
noreturn | Removes carriage return from ASCII files |
nthseq | Writes one sequence from a multiple set of sequences |
pasteseq | Insert one sequence into another |
revseq | Reverse and complement a sequence |
splitter | Split a sequence into (overlapping) smaller sequences |
trimseq | Trim ambiguous bits off the ends of sequences |
vectorstrip | Strips out DNA between a pair of vector sequences |