![]() |
EMBOSS: geecee |
% geecee embl:hhtetra Output file [hhtetra.geecee]:
Mandatory qualifiers: [-sequence] seqall Sequence database USA [-outfile] outfile Output file name Optional qualifiers: (none) Advanced qualifiers: (none) |
Mandatory qualifiers | Allowed values | Default | |
---|---|---|---|
[-sequence] (Parameter 1) |
Sequence database USA | Readable sequence(s) | Required |
[-outfile] (Parameter 2) |
Output file name | Output file | <sequence>.geecee |
Optional qualifiers | Allowed values | Default | |
(none) | |||
Advanced qualifiers | Allowed values | Default | |
(none) |
#Sequence GC content HHTETRA 0.53
The first non-blank line is the title line. Subsequent lines consist of two columns of data.
Program name | Description |
---|---|
chaos | Create a chaos game representation plot for a sequence |
chips | Codon usage statistics |
codcmp | Codon usage table comparison |
compseq | Counts the composition of dimer/trimer/etc words in a sequence |
cpgplot | Plot CpG rich areas |
cpgreport | Reports all CpG rich regions |
cusp | Create a codon usage table |
freak | Residue/base frequency table or plot |
isochore | Plots isochores in large DNA sequences |
newcpgreport | Report CpG rich areas |
newcpgseek | Reports CpG rich regions |
wobble | Wobble base plot |
wordcount | Counts words of a specified size in a DNA sequence |
Completed 18th June 1999. Last Modified 18th July 1999.