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EMBOSS: descseq |
% descseq -seq clone23 -out clone23.seq -name "myclone23"
Set the description of a sequence to "This is my clone number 244"
% descseq -seq xy24 -out xy24.seq -desc "This is my clone number 244"
Append some text to the description of a sequence
% descseq -seq est.seq -out est4.seq -desc " (submitted)" -append
Mandatory qualifiers: [-sequence] sequence Sequence USA [-outseq] seqout Output sequence USA Optional qualifiers: -name string Name of the sequence -description string Description of the sequence Advanced qualifiers: -append bool This allows you to append the name or description you have given on to the end of the existing name or description of the sequence. |
Mandatory qualifiers | Allowed values | Default | |
---|---|---|---|
[-sequence] (Parameter 1) |
Sequence USA | Readable sequence | Required |
[-outseq] (Parameter 2) |
Output sequence USA | Writeable sequence | <sequence>.format |
Optional qualifiers | Allowed values | Default | |
-name | Name of the sequence | Any string is accepted | An empty string is accepted |
-description | Description of the sequence | Any string is accepted | An empty string is accepted |
Advanced qualifiers | Allowed values | Default | |
-append | This allows you to append the name or description you have given on to the end of the existing name or description of the sequence. | Yes/No | No |
Program name | Description |
---|---|
cutseq | Removes a specified section from a sequence |
extractseq | Extract regions from a sequence |
maskfeat | Mask off features of a sequence |
maskseq | Mask off regions of a sequence |
megamerger | Merge two large overlapping nucleic acid sequences |
merger | Merge two overlapping nucleic acid sequences |
newseq | Type in a short new sequence |
noreturn | Removes carriage return from ASCII files |
nthseq | Writes one sequence from a multiple set of sequences |
pasteseq | Insert one sequence into another |
revseq | Reverse and complement a sequence |
splitter | Split a sequence into (overlapping) smaller sequences |
trimseq | Trim ambiguous bits off the ends of sequences |
vectorstrip | Strips out DNA between a pair of vector sequences |