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EMBOSS: prophet |
% prophet
Mandatory qualifiers: [-infile] infile Profile or matrix file -gapopen float Gap opening coefficient -gapextend float Gap extension coefficient [-sequence] seqall Sequence database USA [-outfile] outfile Output file name Optional qualifiers: (none) Advanced qualifiers: (none) |
Mandatory qualifiers | Allowed values | Default | |
---|---|---|---|
[-infile] (Parameter 1) |
Profile or matrix file | Input file | Required |
-gapopen | Gap opening coefficient | Any integer value | 1.0 |
-gapextend | Gap extension coefficient | Any integer value | 0.1 |
[-sequence] (Parameter 2) |
Sequence database USA | Readable sequence(s) | Required |
[-outfile] (Parameter 3) |
Output file name | Output file | <sequence>.prophet |
Optional qualifiers | Allowed values | Default | |
(none) | |||
Advanced qualifiers | Allowed values | Default | |
(none) |
Program name | Description |
---|---|
cons | Creates a consensus from multiple alignments |
profit | Scan a sequence or database with a matrix or profile |
prophecy | Creates matrices/profiles from multiple alignments |