![]() |
EMBOSS: pasteseq |
% pasteseq ese.seq tst.seq estste.seq -pos=67
This is probably slightly more readable if the argument names are used instead of relying on the parameter positions:
% pasteseq -seq=ese.seq -ins=tst.seq -out=estste.seq -pos=67
To insert the sequence 'tst.seq' before the start of sequence 'ese.seq' use -pos=0 :
% pasteseq -seq=ese.seq -ins=tst.seq -out=estste.seq -pos=0
Mandatory qualifiers: [-sequence] sequence Sequence USA [-insseq] sequence Sequence to insert [-outseq] seqout Output sequence USA -pos integer The position in the main input sequence to insert after. To insert before the start use the position 0. Optional qualifiers: (none) Advanced qualifiers: (none) |
Mandatory qualifiers | Allowed values | Default | |
---|---|---|---|
[-sequence] (Parameter 1) |
Sequence USA | Readable sequence | Required |
[-insseq] (Parameter 2) |
Sequence to insert | Readable sequence | Required |
[-outseq] (Parameter 3) |
Output sequence USA | Writeable sequence | <sequence>.format |
-pos | The position in the main input sequence to insert after. To insert before the start use the position 0. | Integer 0 or more | $(sequence.end) |
Optional qualifiers | Allowed values | Default | |
(none) | |||
Advanced qualifiers | Allowed values | Default | |
(none) |
None.
See also
Program name | Description |
---|---|
cutseq | Removes a specified section from a sequence |
descseq | Alter the name or description of a sequence |
extractseq | Extract regions from a sequence |
maskfeat | Mask off features of a sequence |
maskseq | Mask off regions of a sequence |
megamerger | Merge two large overlapping nucleic acid sequences |
merger | Merge two overlapping nucleic acid sequences |
newseq | Type in a short new sequence |
noreturn | Removes carriage return from ASCII files |
nthseq | Writes one sequence from a multiple set of sequences |
revseq | Reverse and complement a sequence |
splitter | Split a sequence into (overlapping) smaller sequences |
trimseq | Trim ambiguous bits off the ends of sequences |
vectorstrip | Strips out DNA between a pair of vector sequences |