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EMBOSS: revseq |
It can also output just the reversed sequence or just the complement of the sequence.
% revseq rcr.seq rcr.rev
To create the complement of the sequence 'rcr.seq' and output to the file 'rcr.rev':
% revseq rcr.seq rcr.rev -norev
To create the reverse of the sequence 'rcr.seq' and output to the file 'rcr.rev':
% revseq rcr.seq rcr.rev -nocomp
Mandatory qualifiers: [-sequence] seqall Sequence database USA [-outseq] seqoutall Output sequence(s) USA Optional qualifiers: (none) Advanced qualifiers: -[no]reverse bool Set this to be false if you do not wish to reverse the output sequence -[no]complement bool Set this to be false if you do not wish to complement the output sequence |
Mandatory qualifiers | Allowed values | Default | |
---|---|---|---|
[-sequence] (Parameter 1) |
Sequence database USA | Readable sequence(s) | Required |
[-outseq] (Parameter 2) |
Output sequence(s) USA | Writeable sequence(s) | <sequence>.format |
Optional qualifiers | Allowed values | Default | |
(none) | |||
Advanced qualifiers | Allowed values | Default | |
-[no]reverse | Set this to be false if you do not wish to reverse the output sequence | Yes/No | Yes |
-[no]complement | Set this to be false if you do not wish to complement the output sequence | Yes/No | Yes |
None.
See also
Program name | Description |
---|---|
cutseq | Removes a specified section from a sequence |
descseq | Alter the name or description of a sequence |
extractseq | Extract regions from a sequence |
maskfeat | Mask off features of a sequence |
maskseq | Mask off regions of a sequence |
megamerger | Merge two large overlapping nucleic acid sequences |
merger | Merge two overlapping nucleic acid sequences |
newseq | Type in a short new sequence |
noreturn | Removes carriage return from ASCII files |
nthseq | Writes one sequence from a multiple set of sequences |
pasteseq | Insert one sequence into another |
splitter | Split a sequence into (overlapping) smaller sequences |
trimseq | Trim ambiguous bits off the ends of sequences |
vectorstrip | Strips out DNA between a pair of vector sequences |