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EMBOSS: tmap |
% tmap sw:opsd_humanclick here for result
Mandatory qualifiers: [-msf] seqset File containing a sequence alignment -graph xygraph Graph type Optional qualifiers: -outfile outfile Output file name Advanced qualifiers: (none) |
Mandatory qualifiers | Allowed values | Default | |
---|---|---|---|
[-msf] (Parameter 1) |
File containing a sequence alignment | Readable sequences | Required |
-graph | Graph type | EMBOSS has a list of known devices, including postscript, ps, hpgl, hp7470, hp7580, meta, colourps, cps, xwindows, x11, tektronics, tekt, tek4107t, tek, none, null, text, data, xterm | EMBOSS_GRAPHICS value, or x11 |
Optional qualifiers | Allowed values | Default | |
-outfile | Output file name | Output file | tmap.res |
Advanced qualifiers | Allowed values | Default | |
(none) |
Program name | Description |
---|---|
antigenic | Finds antigenic sites in proteins |
diffseq | Find differences (SNPs) between nearly identical sequences |
dotmatcher | Displays a thresholded dotplot of two sequences |
dotpath | Displays a non-overlapping wordmatch dotplot of two sequences |
dottup | Displays a wordmatch dotplot of two sequences |
garnier | Predicts protein secondary structure |
helixturnhelix | Report nucleic acid binding motifs |
oddcomp | Finds protein sequence regions with a biased composition |
pepcoil | Predicts coiled coil regions |
polydot | Displays all-against-all dotplots of a set of sequences |
pscan | Scans proteins using PRINTS |
showseq | Display a sequence with features, translation etc |
sigcleave | Reports protein signal cleavage sites |
This application was modified for inclusion in EMBOSS by Ian Longden (il@sanger.ac.uk) Informatics Division, The Sanger Centre, Wellcome Trust Genome Campus, Hinxton, Cambridge, CB10 1SA, UK.