EMBOSS: plotorf


Program plotorf

Function

Plot potential open reading frames

Description

Plot potential open reading frames

Usage

Here is a sample session with plotorf.

% plotorf
Input sequence: embl:paamir
Graph type [x11]: 

Click here to see the graph

Command line arguments

   Mandatory qualifiers:
  [-sequence]          sequence   Sequence USA
   -graph              xygraph    Graph type

   Optional qualifiers: (none)
   Advanced qualifiers: (none)

Mandatory qualifiers Allowed values Default
[-sequence]
(Parameter 1)
Sequence USA Readable sequence Required
-graph Graph type EMBOSS has a list of known devices, including postscript, ps, hpgl, hp7470, hp7580, meta, colourps, cps, xwindows, x11, tektronics, tekt, tek4107t, tek, none, null, text, data, xterm EMBOSS_GRAPHICS value, or x11
Optional qualifiers Allowed values Default
(none)
Advanced qualifiers Allowed values Default
(none)

Input file format

Output file format

Data files

Notes

References

Warnings

Diagnostic Error Messages

Exit status

Known bugs

See also

Program nameDescription
backtranseqBack translate a protein sequence
cuspCreate a codon usage table
getorfFinds and extracts open reading frames (ORFs)
prettyseqOutput sequence with translated ranges
remapDisplay a sequence with restriction cut sites, translation etc
showorfPretty output of DNA translations
showseqDisplay a sequence with features, translation etc
transeqTranslate nucleic acid sequences

Author(s)

This application was written by Alan Bleasby (ableasby@hgmp.mrc.ac.uk)

History

Target users

This program is intended to be used by everyone and everything, from naive users to embedded scripts.

Comments