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EMBOSS: seqretset |
% seqretset Reads and writes (returns) a set of sequences all at once Input sequence set: embl:eclac* Output sequence [outfile.fasta]:
Mandatory qualifiers: [-sequence] seqset Sequence set USA [-outseq] seqoutset Output sequence set USA Optional qualifiers: (none) Advanced qualifiers: (none) |
Mandatory qualifiers | Allowed values | Default | |
---|---|---|---|
[-sequence] (Parameter 1) |
Sequence set USA | Readable sequences | Required |
[-outseq] (Parameter 2) |
Output sequence set USA | Writeable sequences | <sequence>.format |
Optional qualifiers | Allowed values | Default | |
(none) | |||
Advanced qualifiers | Allowed values | Default | |
(none) |
In some cases the output filename will be the same as the input filename, but as seqretset reads all the sequences before opening the output file it will safely overwrite. Note that this is not true of seqretall which only reads the first sequence before opening the ouput file, but is true of seqret which reads the first sequence at startup.
Program name | Description |
---|---|
cirdna | Draws circular maps of DNA constructs |
lindna | Draws linear maps of DNA constructs |
remap | Display a sequence with restriction cut sites, translation etc |
seqret | Reads and writes (returns) sequences |
seqretall | Reads and writes (returns) a set of sequences one at a time |
seqretsplit | Reads and writes (returns) sequences |
showfeat | Show features of a sequence |
showseq | Display a sequence with features, translation etc |