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EMBOSS: tfextract |
% tfextract Extract data from TRANSFAC Full pathname of transfac SITE.DAT: /data/transfac/site.dat
Mandatory qualifiers: [-inf] infile Full pathname of transfac SITE.DAT Optional qualifiers: (none) Advanced qualifiers: (none) |
Mandatory qualifiers | Allowed values | Default | |
---|---|---|---|
[-inf] (Parameter 1) |
Full pathname of transfac SITE.DAT | Input file | Required |
Optional qualifiers | Allowed values | Default | |
(none) | |||
Advanced qualifiers | Allowed values | Default | |
(none) |
These files are used by the tfscan program to search for TRANSFAC sites in sequences.
% ls -1s emboss/data/tf* 18 emboss/data/tffungi 17 emboss/data/tfinsect 56 emboss/data/tfother 4 emboss/data/tfplant 112 emboss/data/tfvertebrate
Program name | Description |
---|---|
embossdata | Finds or fetches the data files read in by the EMBOSS programs |
printsextract | Extract data from PRINTS |
prosextract | Builds the PROSITE motif database for patmatmotifs to search |
rebaseextract | Extract data from REBASE |