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F

FileBrowser - class pipe.gui.widgets.FileBrowser.
 
FileBrowser() - Constructor for class pipe.gui.widgets.FileBrowser
 
FileBrowser(String) - Constructor for class pipe.gui.widgets.FileBrowser
 
FileBrowser(String, String, String) - Constructor for class pipe.gui.widgets.FileBrowser
 
FindMarkup(myNode) - Method in class pipe.dataLayer.calculations.myNode
 
findNetInvariants(int[]) - Method in class pipe.modules.invariantAnalysis.InvariantAnalysis
Find the net invariants.
findNonMinimal() - Method in class pipe.dataLayer.PNMatrix
Find a column with non-minimal support.
findPEquations(int[]) - Method in class pipe.modules.invariantAnalysis.InvariantAnalysis
Find the P equations of the net.
findRemainingNZCoef(int) - Method in class pipe.dataLayer.PNMatrix
Find the coefficients corresponding to column indices of all but the first non zero elements of row h.
findRemainingNZIndices(int) - Method in class pipe.dataLayer.PNMatrix
Find the column indices of all but the first non zero elements of row h.
findVectors(PNMatrix) - Method in class pipe.modules.invariantAnalysis.InvariantAnalysis
Transform a matrix to obtain the minimal generating set of vectors.
finished() - Method in class pipe.modules.dnamaca.SwingWorker
Called on the event dispatching thread (not on the worker thread) after the construct method has returned.
FIRE - Static variable in interface pipe.gui.Constants
 
fire(int) - Method in class pipe.dataLayer.calculations.myNode
 
fireRandomTransition() - Method in class pipe.dataLayer.DataLayer
Fire a random transition, takes rate (probability) of Transitions into account
fireRandomTransitionBackwards() - Method in class pipe.dataLayer.DataLayer
 
fireTransition(Transition) - Method in class pipe.gui.Animator
 
fireTransition(Transition) - Method in class pipe.dataLayer.DataLayer
Fire a specified transition, no affect if transtions not enabled
fireTransitionBackwards(Transition) - Method in class pipe.dataLayer.DataLayer
 
firstNonZeroElementIndex(int) - Method in class pipe.dataLayer.PNMatrix
Find the column index of the first non zero element of row h.
firstNonZeroRowIndex() - Method in class pipe.dataLayer.PNMatrix
Find the first non-zero row of a matrix.
Found_An_Omega - Variable in class pipe.dataLayer.calculations.myTree
 
fSeq - Variable in class pipe.gui.AnimationHistory
Holds all the transitions in the sequence

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