A B C D E F G H I J K L M N O P Q R S T U V

G

gcd() - Method in class pipe.dataLayer.PNMatrix
Find the greatest common divisor of a column matrix (vector) of integers.
get() - Method in class pipe.modules.dnamaca.SwingWorker
Return the value created by the construct method.
get(int) - Method in class pipe.dataLayer.calculations.StateList
 
get(int, int) - Method in class pipe.dataLayer.PNMatrix
Get a single element.
get(int, int) - Method in class jama.Matrix
Get a single element.
getAngle() - Method in class pipe.gui.ArrowHead
 
getAngle() - Method in class pipe.dataLayer.Transition
 
getAngle(ArcPathPoint) - Method in class pipe.dataLayer.ArcPathPoint
 
getAngle(Point2D.Float) - Method in class pipe.dataLayer.ArcPathPoint
 
getAnimationHistory() - Static method in class pipe.gui.CreateGui
 
getAnimator() - Static method in class pipe.gui.CreateGui
 
getApp() - Static method in class pipe.gui.CreateGui
 
getArc() - Method in class pipe.dataLayer.ArcPath
 
getArc(String) - Method in class pipe.dataLayer.DataLayer
Return the Arc called arcName from the Petri-Net
getArcPath() - Method in class pipe.dataLayer.Arc
 
getArcPath() - Method in class pipe.dataLayer.ArcPathPoint
 
getArcPathDetails() - Method in class pipe.dataLayer.ArcPath
 
getArcs() - Method in class pipe.dataLayer.DataLayer
Get an List of all the Arcs objects in the Petri-Net
getArcSelection() - Method in class pipe.dataLayer.ArcPath
 
getArcWithSource(PetriNetObject) - Method in class pipe.dataLayer.DataLayer
Return the Arc called arcName from the Petri-Net
getArcWithTarget(PetriNetObject) - Method in class pipe.dataLayer.DataLayer
Return the Arc called arcName from the Petri-Net
getArray() - Method in class pipe.dataLayer.PNMatrix
Access the internal two-dimensional array.
getArray() - Method in class jama.Matrix
Access the internal two-dimensional array.
getArrayCopy() - Method in class pipe.dataLayer.PNMatrix
Copy the internal two-dimensional array.
getArrayCopy() - Method in class jama.Matrix
Copy the internal two-dimensional array.
getBackwardsIncidenceMatrix() - Method in class pipe.dataLayer.DataLayer
Return the Backward Incidence Matrix for the Petri-Net
getBounds() - Method in class pipe.gui.ArrowHead
 
getBounds() - Method in class pipe.dataLayer.ArcPath
 
getBounds() - Method in class pipe.dataLayer.Token
Get boundaries of java.awt.Rectangle
getBounds2D() - Method in class pipe.gui.ArrowHead
 
getBounds2D() - Method in class pipe.dataLayer.ArcPath
 
getCentre() - Method in class pipe.dataLayer.PlaceTransitionObject
 
getClassRoot(Class) - Static method in class pipe.gui.ExtFileManager
 
getColumnDimension() - Method in class pipe.dataLayer.PNMatrix
Get column dimension.
getColumnDimension() - Method in class jama.Matrix
Get column dimension.
getColumnPackedCopy() - Method in class pipe.dataLayer.PNMatrix
Make a one-dimensional column packed copy of the internal array.
getColumnPackedCopy() - Method in class jama.Matrix
Make a one-dimensional column packed copy of the internal array.
getConnectFromIterator() - Method in class pipe.dataLayer.PlaceTransitionObject
 
getConnectToIterator() - Method in class pipe.dataLayer.PlaceTransitionObject
 
getControl1() - Method in class pipe.dataLayer.ArcPathPoint
 
getControl2() - Method in class pipe.dataLayer.ArcPathPoint
 
getCurrentMarking() - Method in class pipe.dataLayer.Place
Get current marking
getCurrentMarkingObject() - Method in class pipe.dataLayer.Place
Get current marking
getCurrentMarkupMatrix() - Method in class pipe.dataLayer.DataLayer
Return the Initial Markup Matrix for the Petri-Net
getD() - Method in class jama.EigenvalueDecomposition
Return the block diagonal eigenvalue matrix
getDataLayer() - Method in class pipe.gui.widgets.PetriNetChooserPanel
 
getDescription() - Method in class pipe.gui.ExtensionFilter
 
getDOM() - Method in class pipe.dataLayer.DataLayer
Return a DOM for the Petri-Net
getDOM(File) - Method in class pipe.dataLayer.DataLayer
Return a DOM for the PNML File pnmlFile
getDOM(String) - Method in class pipe.dataLayer.DataLayer
Return a DOM for the PNML file at URI pnmlFileName
getDoublePivot() - Method in class jama.LUDecomposition
Return pivot permutation vector as a one-dimensional double array
getEndAngle() - Method in class pipe.dataLayer.ArcPath
 
getEndIndex() - Method in class pipe.dataLayer.ArcPath
 
getEndPositionX() - Method in class pipe.dataLayer.Arc
Get X-axis value of end position
getEndPositionY() - Method in class pipe.dataLayer.Arc
Get Y-axis value of end position
getFile() - Static method in class pipe.gui.CreateGui
 
getForwardsIncidenceMatrix() - Method in class pipe.dataLayer.DataLayer
Return the Foward Incidence Matrix for the Petri-Net
getFreeSpace() - Static method in class pipe.gui.CreateGui
 
getGraph() - Method in class pipe.gui.widgets.GraphPanelPane
 
getGridSpacing() - Static method in class pipe.gui.Grid
 
getH() - Method in class jama.QRDecomposition
Return the Householder vectors
getId() - Method in class pipe.dataLayer.Arc
Get id
getId() - Method in class pipe.dataLayer.PetriNetObject
Get id returns null if value not yet entered
getId() - Method in class pipe.dataLayer.PlaceTransitionObject
Get id
getID() - Method in class pipe.dataLayer.calculations.Marking
 
getID() - Method in class pipe.dataLayer.calculations.StateList
 
getID() - Method in class pipe.dataLayer.AnnotationNote
 
getID() - Method in class pipe.dataLayer.NameLabel
 
getID(int) - Method in class pipe.dataLayer.calculations.StateList
 
getImagEigenvalues() - Method in class jama.EigenvalueDecomposition
Return the imaginary parts of the eigenvalues
getIncidenceMatrix() - Method in class pipe.dataLayer.DataLayer
Return the Incidence Matrix for the Petri-Net
getInitialMarking() - Method in class pipe.dataLayer.Place
Get initial marking
getInitialMarkingObject() - Method in class pipe.dataLayer.Place
Get initial marking
getInitialMarkupMatrix() - Method in class pipe.dataLayer.DataLayer
Return the Initial Markup Matrix for the Petri-Net
getIntersectOffset(Point2D) - Method in class pipe.dataLayer.PlaceTransitionObject
 
getL() - Method in class jama.LUDecomposition
Return lower triangular factor
getL() - Method in class jama.CholeskyDecomposition
Return triangular factor.
getLabels() - Method in class pipe.dataLayer.DataLayer
Get a List of all the net-level NameLabel objects in the Petri-Net
getListPosition(PetriNetObject) - Method in class pipe.dataLayer.DataLayer
Get position of Petri-Net Object in ArrayList of given Petri-Net Object's type
getMarking() - Method in class pipe.dataLayer.calculations.Marking
 
getMarkingOffsetX() - Method in class pipe.dataLayer.Place
Get X-axis offset for initial marking
getMarkingOffsetXObject() - Method in class pipe.dataLayer.Place
Get X-axis offset for initial marking
getMarkingOffsetY() - Method in class pipe.dataLayer.Place
Get Y-axis offset for initial marking
getMarkingOffsetYObject() - Method in class pipe.dataLayer.Place
Get Y-axis offset for initial marking
getMatrix(int[], int[]) - Method in class pipe.dataLayer.PNMatrix
Get a submatrix.
getMatrix(int[], int[]) - Method in class jama.Matrix
Get a submatrix.
getMatrix(int[], int, int) - Method in class pipe.dataLayer.PNMatrix
Get a submatrix.
getMatrix(int[], int, int) - Method in class jama.Matrix
Get a submatrix.
getMatrix(int, int, int[]) - Method in class pipe.dataLayer.PNMatrix
Get a submatrix.
getMatrix(int, int, int[]) - Method in class jama.Matrix
Get a submatrix.
getMatrix(int, int, int, int) - Method in class pipe.dataLayer.PNMatrix
Get a submatrix.
getMatrix(int, int, int, int) - Method in class jama.Matrix
Get a submatrix.
getMode() - Method in class pipe.gui.GuiFrame
 
getModel() - Static method in class pipe.gui.CreateGui
 
getModel(int) - Static method in class pipe.gui.CreateGui
 
getModifiedX(double) - Static method in class pipe.gui.Grid
 
getModifiedY(double) - Static method in class pipe.gui.Grid
 
getModuleTree() - Method in class pipe.gui.ModuleManager
Method creates and returns a Module management tree.
getName() - Method in class pipe.modules.comparison.Comparison
 
getName() - Method in class pipe.dataLayer.PlaceTransitionObject
Get name
getName() - Method in class pipe.modules.gspn.GSPN
 
getName() - Method in interface pipe.modules.Module
 
getName() - Method in class pipe.modules.matrixes.Matrixes
 
getName() - Method in class pipe.modules.stateSpace.StateSpace
 
getName() - Method in class pipe.modules.simulation.Simulation
 
getName() - Method in class pipe.modules.classification.Classification
 
getName() - Method in class pipe.modules.invariantAnalysis.InvariantAnalysis
 
getName() - Method in class pipe.modules.dnamaca.Dnamaca
 
getNameLabel() - Method in class pipe.dataLayer.PetriNetObject
Returns Name Label - is used by GuiView
getNegativeIndices(int) - Method in class pipe.dataLayer.PNMatrix
For row rowNo of the matrix received return the column indices of all the negative elements
getNote() - Method in class pipe.dataLayer.AnnotationNote
 
getNoteHeight() - Method in class pipe.dataLayer.AnnotationNote
 
getNoteText() - Method in class pipe.dataLayer.AnnotationNote
 
getNoteWidth() - Method in class pipe.dataLayer.AnnotationNote
 
getNumberSequences() - Method in class pipe.gui.Animator
 
getNumPoints() - Method in class pipe.dataLayer.ArcPath
 
getPath() - Method in class pipe.dataLayer.ArcPath
 
getPathIterator(AffineTransform) - Method in class pipe.gui.ArrowHead
 
getPathIterator(AffineTransform) - Method in class pipe.dataLayer.ArcPath
 
getPathIterator(AffineTransform, double) - Method in class pipe.gui.ArrowHead
 
getPathIterator(AffineTransform, double) - Method in class pipe.dataLayer.ArcPath
 
getPathPoint(int) - Method in class pipe.dataLayer.ArcPath
 
getPetriNetObjects() - Method in class pipe.dataLayer.DataLayer
Returns an iterator of all PetriNetObjects - the order of these cannot be guaranteed.
getPivot() - Method in class jama.LUDecomposition
Return pivot permutation vector
getPlace(int) - Method in class pipe.dataLayer.DataLayer
Return the Place called placeName from the Petri-Net
getPlace(String) - Method in class pipe.dataLayer.DataLayer
Return the Place called placeName from the Petri-Net
getPlaces() - Method in class pipe.dataLayer.DataLayer
Get an List of all the Place objects in the Petri-Net
getPlaceTransitionObject(String) - Method in class pipe.dataLayer.DataLayer
Return the PlaceTransitionObject called ptoName from the Petri-Net
getPoint() - Method in class pipe.dataLayer.ArcPathPoint
 
getPoint(int) - Method in class pipe.dataLayer.ArcPath
 
getPointSelection() - Method in class pipe.dataLayer.ArcPath
 
getPointType() - Method in class pipe.dataLayer.ArcPathPoint
 
getPopup(MouseEvent) - Method in class pipe.gui.ArcHandler
Creates the popup menu that the user will see when they right click on a component
getPopup(MouseEvent) - Method in class pipe.gui.TransitionHandler
Creates the popup menu that the user will see when they right click on a component
getPopup(MouseEvent) - Method in class pipe.gui.AnnotationNoteHandler
Creates the popup menu that the user will see when they right click on a component
getPopup(MouseEvent) - Method in class pipe.gui.PlaceTransitionObjectHandler
 
getPopup(MouseEvent) - Method in class pipe.gui.ArcPathPointHandler
Creates the popup menu that the user will see when they right click on a component
getPopup(MouseEvent) - Method in class pipe.gui.PetriNetObjectHandler
Creates the popup menu that the user will see when they right click on a component
getPopup(MouseEvent) - Method in class pipe.gui.PlaceHandler
Creates the popup menu that the user will see when they right click on a component
getPositionX() - Method in class pipe.dataLayer.PlaceTransitionObject
Get X-axis position
getPositionXObject() - Method in class pipe.dataLayer.PlaceTransitionObject
Get X-axis position returns null if value not yet entered
getPositionY() - Method in class pipe.dataLayer.PlaceTransitionObject
Get Y-axis position
getPositionYObject() - Method in class pipe.dataLayer.PlaceTransitionObject
Get Y-axis position returns null if value not yet entered
getPositiveIndices(int) - Method in class pipe.dataLayer.PNMatrix
For row rowNo of the matrix received return the column indices of all the positive elements
getQ() - Method in class jama.QRDecomposition
Generate and return the (economy-sized) orthogonal factor
getR() - Method in class jama.QRDecomposition
Return the upper triangular factor
getRate() - Method in class pipe.dataLayer.Transition
 
getRealEigenvalues() - Method in class jama.EigenvalueDecomposition
Return the real parts of the eigenvalues
getRowDimension() - Method in class pipe.dataLayer.PNMatrix
Get row dimension.
getRowDimension() - Method in class jama.Matrix
Get row dimension.
getRowPackedCopy() - Method in class pipe.dataLayer.PNMatrix
Make a one-dimensional row packed copy of the internal array.
getRowPackedCopy() - Method in class jama.Matrix
Make a one-dimensional row packed copy of the internal array.
getS() - Method in class jama.SingularValueDecomposition
Return the diagonal matrix of singular values
getSelectionCount() - Method in class pipe.gui.SelectionObject
 
getSelectionObject() - Method in class pipe.gui.GuiView
 
getShape() - Method in class pipe.dataLayer.Token
Get shape of object for drawing on screen
getSingularValues() - Method in class jama.SingularValueDecomposition
Return the one-dimensional array of singular values
getSource() - Method in class pipe.dataLayer.Arc
Get source returns null if value not yet entered
getStartAngle() - Method in class pipe.dataLayer.ArcPath
 
getStartPositionX() - Method in class pipe.dataLayer.Arc
Get X-axis value of start position
getStartPositionY() - Method in class pipe.dataLayer.Arc
Get Y-axis value of start position
getStatusBar() - Method in class pipe.gui.GuiFrame
 
getTab() - Static method in class pipe.gui.CreateGui
 
getTarget() - Method in class pipe.dataLayer.Arc
Get target returns null if value not yet entered
getTimed() - Method in class pipe.dataLayer.Transition
Get the timed transition attribute (for GSPNs)
getTransition(int) - Method in class pipe.dataLayer.DataLayer
Return the Transition called transitionName from the Petri-Net
getTransition(String) - Method in class pipe.dataLayer.DataLayer
Return the Transition called transitionName from the Petri-Net
getTransitions() - Method in class pipe.dataLayer.DataLayer
Get an List of all the Transition objects in the Petri-Net
getU() - Method in class jama.SingularValueDecomposition
Return the left singular vectors
getU() - Method in class jama.LUDecomposition
Return upper triangular factor
getUniqueId() - Method in class pipe.dataLayer.Token
returns a unique id for an arc of the form to_n
getURI() - Method in class pipe.dataLayer.DataLayer
Return a URI for the PNML file for the Petri-Net
getV() - Method in class jama.SingularValueDecomposition
Return the right singular vectors
getV() - Method in class jama.EigenvalueDecomposition
Return the eigenvector matrix
getView() - Static method in class pipe.gui.CreateGui
 
getView(int) - Static method in class pipe.gui.CreateGui
 
getWeight() - Method in class pipe.dataLayer.Arc
Get weight
getWeightObject() - Method in class pipe.dataLayer.Arc
Get weight returns null if value not yet entered
getWeightOffsetX() - Method in class pipe.dataLayer.Arc
Get X-axis offset for weight position
getWeightOffsetXObject() - Method in class pipe.dataLayer.Arc
Get X-axis offset for weight position returns null if value not yet entered
getWeightOffsetY() - Method in class pipe.dataLayer.Arc
Get Y-axis offset for weight position
getWeightOffsetYObject() - Method in class pipe.dataLayer.Arc
Get Y-axis offset for weight position returns null if value not yet entered
getXPosition() - Method in class pipe.dataLayer.NameLabel
 
getYPosition() - Method in class pipe.dataLayer.NameLabel
 
GraphPanel - class pipe.gui.widgets.GraphPanel.
 
GraphPanel() - Constructor for class pipe.gui.widgets.GraphPanel
 
GraphPanel(ArrayList, ArrayList) - Constructor for class pipe.gui.widgets.GraphPanel
 
GraphPanelPane - class pipe.gui.widgets.GraphPanelPane.
 
GraphPanelPane() - Constructor for class pipe.gui.widgets.GraphPanelPane
 
Grid - class pipe.gui.Grid.
 
GRID - Static variable in interface pipe.gui.Constants
 
Grid() - Constructor for class pipe.gui.Grid
 
GSPN - class pipe.modules.gspn.GSPN.
 
GSPN() - Constructor for class pipe.modules.gspn.GSPN
 
GuiFrame - class pipe.gui.GuiFrame.
 
GuiFrame(String) - Constructor for class pipe.gui.GuiFrame
 
GuiView - class pipe.gui.GuiView.
The petrinet is drawn onto this frame.
GuiView() - Constructor for class pipe.gui.GuiView
 

A B C D E F G H I J K L M N O P Q R S T U V