Deprecated API

Deprecated Classes
org.biojava.stats.svm.LinearKernel
          Just use SparseVector.kernel instead... 
 

Deprecated Methods
org.biojava.bio.symbol.SimpleSymbolList.addSymbol(Symbol)
          Can we make SimpleSymbolList immutable [Thomas Down] 
org.biojava.bio.seq.ViewSequence.createFeature(FeatureHolder, Feature.Template)
          Please use 1-arg createFeature instead. 
org.biojava.bio.seq.SimpleSequence.createFeature(FeatureHolder, Feature.Template)
          Please use new 1-arg createFeature instead. 
org.biojava.bio.symbol.AlphabetManager.instance()
          all AlphabetManager methods have become static