org.biojava.bio.seq.io
Class StreamWriter
java.lang.Object
|
+--org.biojava.bio.seq.io.StreamWriter
- public class StreamWriter
- extends java.lang.Object
Writes all of the sequences from a SequenceIterator to a stream with a
particular format.
This can be wired from a StreamReader to make a simple file-format conversion
utility, or can be used to write out the sequences in a database to disk.
- Author:
- Matthew Pocock
Constructor Summary |
StreamWriter(java.io.OutputStream os,
SequenceFormat format)
Generate a new StreamWriter to the stream os and using format. |
Methods inherited from class java.lang.Object |
clone,
equals,
finalize,
getClass,
hashCode,
notify,
notifyAll,
toString,
wait,
wait,
wait |
StreamWriter
public StreamWriter(java.io.OutputStream os,
SequenceFormat format)
- Generate a new StreamWriter to the stream os and using format.
- Parameters:
os
- the OutputStream to write toformat
- the SequenceFormat to write with
writeStream
public void writeStream(SequenceIterator ss)
throws java.io.IOException
- Write each of the sequences in ss to the stream in the given format.
- Parameters:
ss
- the SequenceIterator to loop over- Throws:
- java.io.IOException - if the stream has any problems