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SUMMARY: INNER | FIELD | CONSTR | METHOD | DETAIL: FIELD | CONSTR | METHOD |
objects of this type represent one particular sub-hit (i.e. one concrete sequence stretch within a sequence and associated information) from a sequence similarity search hit.
Field Summary | |
static java.lang.String |
QUERY_LABEL
this object is used as the label for the query sequence in the alignment of the query sequence with this sub-hit sequence |
Method Summary | |
java.lang.Object |
clone()
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Alignment |
getAlignment()
return an alignment of (possibly part of) the query sequence against (possibly part of) this hit sequence. |
double |
getEValue()
return the E-value of this sub-hit. |
SeqSimilaritySearchHit |
getHit()
return the ssequence similarity search hit to which this sequence similarity search sub-hit belongs. |
double |
getPValue()
return the P-value of this sub-hit. |
double |
getScore()
return the score of this sub-hit in the units defined by the search algorithm. |
Field Detail |
public static final java.lang.String QUERY_LABEL
Method Detail |
public SeqSimilaritySearchHit getHit()
public double getScore()
public double getPValue()
public double getEValue()
public Alignment getAlignment()
public java.lang.Object clone()
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