org.biojava.bio.dp
Class MagicalState

java.lang.Object
  |
  +--org.biojava.bio.dp.SimpleEmissionState
        |
        +--org.biojava.bio.dp.MagicalState

public final class MagicalState
extends SimpleEmissionState

Start/end state for HMMs.

All MagicalState objects emit over MAGICAL_ALPHABET, which only contains MAGICAL_STATE.

Author:
Matthew Pocock
See Also:
Serialized Form

Method Summary
static MagicalState getMagicalState(Alphabet alphabet, int heads)
           
 
Methods inherited from class org.biojava.bio.dp.SimpleEmissionState
getAdvance, getAnnotation, getDistribution, getMatches, getName, getToken, registerWithTrainer, setAdvance, setAnnotation, setDistribution, setName
 
Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
 

Method Detail

getMagicalState

public static MagicalState getMagicalState(Alphabet alphabet,
                                           int heads)