org.biojava.bridge.Biocorba.Seqcore
Class SeqImpl
java.lang.Object
|
+--org.biojava.bridge.GNOME.UnknownImpl
|
+--org.biojava.bridge.Biocorba.Seqcore.AnonymousSeqImpl
|
+--org.biojava.bridge.Biocorba.Seqcore.PrimarySeqImpl
|
+--org.biojava.bridge.Biocorba.Seqcore.SeqImpl
- public class SeqImpl
- extends PrimarySeqImpl
- implements _Seq_Operations
Methods inherited from class java.lang.Object |
clone,
equals,
finalize,
getClass,
hashCode,
notify,
notifyAll,
toString,
wait,
wait,
wait |
SeqImpl
public SeqImpl(Sequence sequence)
throws IllegalAlphabetException
SeqImpl
public SeqImpl(Sequence sequence,
java.lang.String id)
throws IllegalAlphabetException
SeqImpl
public SeqImpl(Sequence sequence,
java.lang.String displayID,
java.lang.String primaryID,
java.lang.String accessionNumber)
throws IllegalAlphabetException
getSequence
public Sequence getSequence()
all_features
public SeqFeature[] all_features(org.omg.CORBA.portable.ObjectImpl seq)
throws RequestTooLarge
- Specified by:
- all_features in interface _Seq_Operations
all_features_iterator
public SeqFeatureIterator all_features_iterator(org.omg.CORBA.portable.ObjectImpl seq)
- Specified by:
- all_features_iterator in interface _Seq_Operations
features_region
public SeqFeature[] features_region(org.omg.CORBA.portable.ObjectImpl seq,
int start,
int end)
throws OutOfRange,
UnableToProcess,
RequestTooLarge
- Specified by:
- features_region in interface _Seq_Operations
features_region_iterator
public SeqFeatureIterator features_region_iterator(org.omg.CORBA.portable.ObjectImpl seq,
int start,
int end)
throws OutOfRange,
UnableToProcess
- Specified by:
- features_region_iterator in interface _Seq_Operations
max_feature_request
public int max_feature_request(org.omg.CORBA.portable.ObjectImpl seq)
- Specified by:
- max_feature_request in interface _Seq_Operations
get_PrimarySeq
public PrimarySeq get_PrimarySeq(org.omg.CORBA.portable.ObjectImpl seq)
- Specified by:
- get_PrimarySeq in interface _Seq_Operations