psiphi

 

Function

Calculates phi and psi torsion angles from cleaned EMBOSS-style protein co-ordinate file

Description

Calculates the psi and phi torsion angles around the alpha carbons (CA) in (a specified stretch of) a specified chain of a protein structure from the co-ordinates of the mainchain atoms in the two planes around it

Algorithm

**************** EDIT HERE ****************

Usage

Here is a sample session with psiphi


% psiphi 1atn.pxyz -chainnumber=2 -startresiduenumber=4 -finishresiduenumber=65 -outf=1atn.psiphi 
Calculates phi and psi torsion angles from cleaned EMBOSS-style protein
co-ordinate file

Go to the input files for this example
Go to the output files for this example

Command line arguments

   Standard (Mandatory) qualifiers:
  [-infile]            infile     Clean coordinate file
   -chainnumber        integer    Number of the chain for which torsion angles
                                  should be calculated
   -startresiduenumber integer    First residue in chain for which torsion
                                  angles should be calculated
   -finishresiduenumber integer    Last residue in chain for which torsion
                                  angles should be calculated (1 = last
                                  residue)
  [-outfile]           report     Output report file name

   Additional (Optional) qualifiers: (none)
   Advanced (Unprompted) qualifiers: (none)
   Associated qualifiers:

   "-outfile" associated qualifiers
   -rformat2           string     Report format
   -rname2             string     Base file name
   -rextension2        string     File name extension
   -rdirectory2        string     Output directory
   -raccshow2          boolean    Show accession number in the report
   -rdesshow2          boolean    Show description in the report
   -rscoreshow2        boolean    Show the score in the report
   -rusashow2          boolean    Show the full USA in the report

   General qualifiers:
   -auto               boolean    Turn off prompts
   -stdout             boolean    Write standard output
   -filter             boolean    Read standard input, write standard output
   -options            boolean    Prompt for standard and additional values
   -debug              boolean    Write debug output to program.dbg
   -verbose            boolean    Report some/full command line options
   -help               boolean    Report command line options. More
                                  information on associated and general
                                  qualifiers can be found with -help -verbose
   -warning            boolean    Report warnings
   -error              boolean    Report errors
   -fatal              boolean    Report fatal errors
   -die                boolean    Report deaths


Standard (Mandatory) qualifiers Allowed values Default
[-infile]
(Parameter 1)
Clean coordinate file Input file Required
-chainnumber Number of the chain for which torsion angles should be calculated Integer 1 or more 1
-startresiduenumber First residue in chain for which torsion angles should be calculated Integer 1 or more 1
-finishresiduenumber Last residue in chain for which torsion angles should be calculated (1 = last residue) Any integer value 1
[-outfile]
(Parameter 2)
Output report file name Report output file  
Additional (Optional) qualifiers Allowed values Default
(none)
Advanced (Unprompted) qualifiers Allowed values Default
(none)

Input file format

psiphi reads ...

Input files for usage example

File: 1atn.pxyz

ID   1atn
XX
DE   DEOXYRIBONUCLEASE I COMPLEX WITH ACTIN
XX
OS   ACTIN FROM RABBIT (ORYCTOLAGUS $CUNICULUS) MUSCLE, DEOXYRIBONUCLEASE I FROM
OS   BOVINE (BOS $TAURUS) PANCREAS
XX
EX   METHOD xray; RESO 2.80; NMOD 1; NCHA 2; NGRP 0;
XX
CN   [1]
XX
IN   ID A; NR 373; NL 1; NH 0; NE 0;
XX
SQ   SEQUENCE   373 AA;  41549 MW;  DC8866DE CRC32;
     XDEDETTALV CDNGSGLVKA GFAGDDAPRA VFPSIVGRPR HQGVMVGMGQ KDSYVGDEAQ
     SKRGILTLKY PIEHGIITNW DDMEKIWHHT FYNELRVAPE EHPTLLTEAP LNPKANREKM
     TQIMFETFNV PAMYVAIQAV LSLYASGRTT GIVLDSGDGV THNVPIYEGY ALPHAIMRLD
     LAGRDLTDYL MKILTERGYS FVTTAEREIV RDIKEKLCYV ALDFENEMAT AASSSSLEKS
     YELPDGQVIT IGNERFRCPE TLFQPSFIGM ESAGIHETTY NSIMKCDIDI RKDLYANNVM
     SGGTTMYPGI ADRMQKEITA LAPSTMKIKI IAPPERKYSV WIGGSILASL STFQQMWITK
     QEYDEAGPSI VHR
XX
CN   [2]
XX
IN   ID D; NR 260; NL 4; NH 0; NE 0;
XX
SQ   SEQUENCE   260 AA;  29021 MW;  CF3AF818 CRC32;
     LKIAAFNIRT FGETKMSNAT LASYIVRIVR RYDIVLIQEV RDSHLVAVGK LLDYLNQDDP
     NTYHYVVSEP LGRNSYKERY LFLFRPNKVS VLDTYQYDDG CGNCGNDSFS REPAVVKFSS
     HSTKVKEFAI VALHSAPSDA VAEINSLYDV YLDVQQKWHL NDVMLMGDFN ADCSYVTSSQ
     WSSIRLRTSS TFQWLIPDSA DTTATSTNCA YDRIVVAGSL LQSSVVPGSA APFDFQAAYG
     LSNEMALAIS DHYPVEVTLT
XX
CO   1    1    .    P    1     0     .    .    .    .    .    .    X    ACE    CA   105.046   51.546   40.626    1.00   72.72    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00
CO   1    1    .    P    1     0     .    .    .    .    .    .    X    ACE    C    105.314   50.822   41.951    1.00   72.72    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00
CO   1    1    .    P    1     0     .    .    .    .    .    .    X    ACE    O    105.220   51.451   43.013    1.00   72.56    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00
CO   1    1    .    P    2     1     .    .    .    .    .    .    D    ASP    N    105.665   49.507   41.867    1.00   71.64    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00
CO   1    1    .    P    2     1     .    .    .    .    .    .    D    ASP    CA   105.992   48.589   42.982    1.00   70.20    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00
CO   1    1    .    P    2     1     .    .    .    .    .    .    D    ASP    C    107.024   49.191   43.936    1.00   69.70    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00
CO   1    1    .    P    2     1     .    .    .    .    .    .    D    ASP    O    106.927   49.088   45.163    1.00   69.14    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00
CO   1    1    .    P    2     1     .    .    .    .    .    .    D    ASP    CB   106.533   47.248   42.410    1.00   70.66    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00
CO   1    1    .    P    2     1     .    .    .    .    .    .    D    ASP    CG   106.801   46.077   43.383    1.00   71.73    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00
CO   1    1    .    P    2     1     .    .    .    .    .    .    D    ASP    OD1  107.722   46.143   44.215    1.00   71.57    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00
CO   1    1    .    P    2     1     .    .    .    .    .    .    D    ASP    OD2  106.092   45.066   43.291    1.00   71.25    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00
CO   1    1    .    P    3     2     .    .    .    .    .    .    E    GLU    N    107.976   49.873   43.293    1.00   69.24    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00
CO   1    1    .    P    3     2     .    .    .    .    .    .    E    GLU    CA   109.054   50.658   43.886    1.00   69.94    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00
CO   1    1    .    P    3     2     .    .    .    .    .    .    E    GLU    C    108.707   51.166   45.277    1.00   69.71    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00
CO   1    1    .    P    3     2     .    .    .    .    .    .    E    GLU    O    109.454   51.029   46.250    1.00   69.74    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00
CO   1    1    .    P    3     2     .    .    .    .    .    .    E    GLU    CB   109.372   51.861   42.969    1.00   69.58    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00
CO   1    1    .    P    3     2     .    .    .    .    .    .    E    GLU    CG   110.164   51.624   41.669    1.00   68.60    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00


  [Part of this file has been deleted for brevity]

CO   1    2    1    H    .     19    .    .    .    .    .    .    .    NAG    O4    98.227   34.053  113.446    1.00   64.85    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00
CO   1    2    1    H    .     19    .    .    .    .    .    .    .    NAG    O5   100.413   31.985  111.201    1.00   54.20    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00
CO   1    2    1    H    .     19    .    .    .    .    .    .    .    NAG    O6    97.994   32.836  109.744    1.00   59.46    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00
CO   1    2    1    H    .     19    .    .    .    .    .    .    .    NAG    O7   103.385   35.944  112.239    1.00   55.99    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00
CO   1    2    2    H    .     20    .    .    .    .    .    .    .    MAN    C1    96.772   33.881  113.379    1.00   68.38    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00
CO   1    2    2    H    .     20    .    .    .    .    .    .    .    MAN    C2    96.423   32.389  113.835    1.00   70.26    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00
CO   1    2    2    H    .     20    .    .    .    .    .    .    .    MAN    C3    94.879   32.118  113.838    1.00   70.54    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00
CO   1    2    2    H    .     20    .    .    .    .    .    .    .    MAN    C4    94.053   33.398  114.389    1.00   69.85    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00
CO   1    2    2    H    .     20    .    .    .    .    .    .    .    MAN    C5    94.592   34.841  113.979    1.00   68.53    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00
CO   1    2    2    H    .     20    .    .    .    .    .    .    .    MAN    C6    94.002   35.946  114.874    1.00   68.79    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00
CO   1    2    2    H    .     20    .    .    .    .    .    .    .    MAN    O2    96.914   32.017  115.162    1.00   72.48    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00
CO   1    2    2    H    .     20    .    .    .    .    .    .    .    MAN    O3    94.659   30.955  114.705    1.00   70.24    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00
CO   1    2    2    H    .     20    .    .    .    .    .    .    .    MAN    O4    92.653   33.295  113.978    1.00   67.74    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00
CO   1    2    2    H    .     20    .    .    .    .    .    .    .    MAN    O5    96.045   34.932  114.115    1.00   68.39    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00
CO   1    2    2    H    .     20    .    .    .    .    .    .    .    MAN    O6    93.433   35.451  116.094    1.00   66.54    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00
CO   1    2    3    H    .     1     .    .    .    .    .    .    .    ATP    PG    94.786   57.032   71.655    1.00   17.67    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00
CO   1    2    3    H    .     1     .    .    .    .    .    .    .    ATP    O1G   93.888   57.203   72.813    1.00   17.23    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00
CO   1    2    3    H    .     1     .    .    .    .    .    .    .    ATP    O2G   94.087   56.937   70.331    1.00   18.23    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00
CO   1    2    3    H    .     1     .    .    .    .    .    .    .    ATP    O3G   95.936   57.949   71.667    1.00   13.03    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00
CO   1    2    3    H    .     1     .    .    .    .    .    .    .    ATP    PB    95.420   54.238   70.875    1.00   17.65    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00
CO   1    2    3    H    .     1     .    .    .    .    .    .    .    ATP    O1B   95.408   54.672   69.455    1.00   17.84    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00
CO   1    2    3    H    .     1     .    .    .    .    .    .    .    ATP    O2B   96.550   53.385   71.257    1.00   16.43    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00
CO   1    2    3    H    .     1     .    .    .    .    .    .    .    ATP    O3B   95.434   55.566   71.804    1.00   17.15    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00
CO   1    2    3    H    .     1     .    .    .    .    .    .    .    ATP    PA    93.252   52.426   70.371    1.00   14.57    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00
CO   1    2    3    H    .     1     .    .    .    .    .    .    .    ATP    O1A   92.117   53.068   69.684    1.00   17.79    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00
CO   1    2    3    H    .     1     .    .    .    .    .    .    .    ATP    O2A   94.234   51.707   69.559    1.00   15.67    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00
CO   1    2    3    H    .     1     .    .    .    .    .    .    .    ATP    O3A   94.040   53.512   71.217    1.00   14.88    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00
CO   1    2    3    H    .     1     .    .    .    .    .    .    .    ATP    O5*   92.578   51.370   71.396    1.00   16.54    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00
CO   1    2    3    H    .     1     .    .    .    .    .    .    .    ATP    C5*   93.252   50.711   72.492    1.00   18.27    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00
CO   1    2    3    H    .     1     .    .    .    .    .    .    .    ATP    C4*   92.460   50.926   73.755    1.00   19.17    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00
CO   1    2    3    H    .     1     .    .    .    .    .    .    .    ATP    O4*   91.144   50.564   73.360    1.00   20.56    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00
CO   1    2    3    H    .     1     .    .    .    .    .    .    .    ATP    C3*   92.722   50.104   75.040    1.00   20.09    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00
CO   1    2    3    H    .     1     .    .    .    .    .    .    .    ATP    O3*   92.087   50.587   76.224    1.00   17.92    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00
CO   1    2    3    H    .     1     .    .    .    .    .    .    .    ATP    C2*   91.959   48.850   74.668    1.00   20.89    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00
CO   1    2    3    H    .     1     .    .    .    .    .    .    .    ATP    O2*   91.527   48.031   75.744    1.00   21.55    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00
CO   1    2    3    H    .     1     .    .    .    .    .    .    .    ATP    C1*   90.679   49.466   74.154    1.00   21.41    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00
CO   1    2    3    H    .     1     .    .    .    .    .    .    .    ATP    N9    89.918   48.445   73.348    1.00   21.59    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00
CO   1    2    3    H    .     1     .    .    .    .    .    .    .    ATP    C8    90.398   47.620   72.338    1.00   21.06    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00
CO   1    2    3    H    .     1     .    .    .    .    .    .    .    ATP    N7    89.510   46.748   71.915    1.00   20.71    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00
CO   1    2    3    H    .     1     .    .    .    .    .    .    .    ATP    C5    88.413   46.916   72.781    1.00   16.60    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00
CO   1    2    3    H    .     1     .    .    .    .    .    .    .    ATP    C6    87.170   46.213   72.863    1.00   14.07    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00
CO   1    2    3    H    .     1     .    .    .    .    .    .    .    ATP    N6    86.856   45.101   72.189    1.00    9.78    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00
CO   1    2    3    H    .     1     .    .    .    .    .    .    .    ATP    N1    86.253   46.764   73.722    1.00   13.84    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00
CO   1    2    3    H    .     1     .    .    .    .    .    .    .    ATP    C2    86.612   47.919   74.399    1.00   15.25    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00
CO   1    2    3    H    .     1     .    .    .    .    .    .    .    ATP    N3    87.800   48.496   74.561    1.00   15.64    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00
CO   1    2    3    H    .     1     .    .    .    .    .    .    .    ATP    C4    88.626   48.004   73.609    1.00   17.21    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00
CO   1    2    4    H    .     2     .    .    .    .    .    .    .     CA    CA    94.454   56.550   67.891    1.00   32.57    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00
CO   1    2    4    H    .     3     .    .    .    .    .    .    .     CA    CA   114.215   17.675  107.885    1.00    7.01    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00
CO   1    2    4    H    .     4     .    .    .    .    .    .    .     CA    CA   112.657   20.573   78.226    1.00   19.23    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00
CO   1    2    4    H    .     5     .    .    .    .    .    .    .     CA    CA   119.545   10.433  103.688    1.00   46.63    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00
//

Output file format

psiphi outputs ...

Output files for usage example

File: 1atn.psiphi

########################################
# Program: psiphi
# Rundate: Thu Jul 15 2004 12:00:00
# Report_format: table
# Report_file: 1atn.psiphi
########################################

#=======================================
#
# Sequence:      from: 1   to: 260
# HitCount: 62
#
# Chain: 2
#
#=======================================

  Start     End   Score    phi    psi
      4       4     0.0  -152.91   162.88
      5       5     0.0  -129.90   132.52
      6       6     0.0  -142.63   113.29
      7       7     0.0   -91.20   109.22
      8       8     0.0   -99.20   117.89
      9       9     0.0   -56.16   115.60
     10      10     0.0    57.98    45.32
     11      11     0.0   -59.93   122.46
     12      12     0.0  -160.93  -176.93
     13      13     0.0   -55.71   -39.72
     14      14     0.0   -67.65   -49.61
     15      15     0.0   -63.01   -41.04
     16      16     0.0   -71.25   -23.04
     17      17     0.0   -69.32   -27.48
     18      18     0.0   -71.35   139.52
     19      19     0.0   -80.91   -39.47
     20      20     0.0   -66.20   -52.09
     21      21     0.0   -58.24   -49.39
     22      22     0.0   -55.11   -37.72
     23      23     0.0   -69.44   -26.56
     24      24     0.0   -89.18   -40.94
     25      25     0.0   -58.18   -50.57
     26      26     0.0   -55.42   -35.34
     27      27     0.0   -75.89   -29.61
     28      28     0.0   -73.06   -47.91
     29      29     0.0   -58.27   -39.38
     30      30     0.0   -74.40     7.40
     31      31     0.0   -88.83   -12.94
     32      32     0.0  -112.19   143.00
     33      33     0.0   -83.95   -22.06
     34      34     0.0  -139.78   125.86
     35      35     0.0  -130.67   137.57
     36      36     0.0  -111.45   130.80
     37      37     0.0  -122.64   128.08
     38      38     0.0  -107.31   161.06
     39      39     0.0    69.88    33.76
     40      40     0.0   -78.38    95.67
     41      41     0.0  -100.44    80.73
     42      42     0.0  -131.78   103.94
     43      43     0.0   -71.07   -45.38
     44      44     0.0   -98.79    -4.45
     45      45     0.0    75.81    20.16
     46      46     0.0   -65.57   -34.72
     47      47     0.0   -76.51   -33.90
     48      48     0.0   -69.12   -40.81
     49      49     0.0   -52.66   -49.63
     50      50     0.0   -66.30   -36.64
     51      51     0.0   -67.41   -40.85
     52      52     0.0   -74.64   -31.01
     53      53     0.0   -55.01   -50.20
     54      54     0.0   -54.59   -54.81
     55      55     0.0   -67.07   -26.37
     56      56     0.0  -114.18    26.44
     57      57     0.0   -71.15   -21.29
     58      58     0.0  -116.13   -27.89
     59      59     0.0  -120.69   134.74
     60      60     0.0   -67.87   -18.39
     61      61     0.0  -121.37    38.83
     62      62     0.0   -64.44   -32.21
     63      63     0.0  -145.31   135.69
     64      64     0.0  -115.03   154.92
     65      65     0.0  -120.22   167.29

#---------------------------------------
#---------------------------------------

Data files

Notes

None.

References

None.

Warnings

None.

Diagnostic Error Messages

None.

Exit status

It always exits with status 0.

Known bugs

None.

See also

Program nameDescription

Author(s)

Damian Counsell (d.counsell © rfcgr.mrc.ac.uk)
MRC Rosalind Franklin Centre for Genomics Research Wellcome Trust Genome Campus, Hinxton, Cambridge, CB10 1SB, UK

History

Target users

This program is intended to be used by everyone and everything, from naive users to embedded scripts.

Comments

None