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ealistat |
% ealistat ../ehmmalign-keep/globins630.ali Statistics for multiple alignment files Output file [globins630.ealistat]: |
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Standard (Mandatory) qualifiers: [-infile] infile Alignment file [-outfile] outfile Output file name Additional (Optional) qualifiers: (none) Advanced (Unprompted) qualifiers: -additional boolean Show additional information -fast boolean Use sampling method Associated qualifiers: "-outfile" associated qualifiers -odirectory2 string Output directory General qualifiers: -auto boolean Turn off prompts -stdout boolean Write standard output -filter boolean Read standard input, write standard output -options boolean Prompt for standard and additional values -debug boolean Write debug output to program.dbg -verbose boolean Report some/full command line options -help boolean Report command line options. More information on associated and general qualifiers can be found with -help -verbose -warning boolean Report warnings -error boolean Report errors -fatal boolean Report fatal errors -die boolean Report deaths |
Standard (Mandatory) qualifiers | Allowed values | Default | |
---|---|---|---|
[-infile] (Parameter 1) |
Alignment file | Input file | Required |
[-outfile] (Parameter 2) |
Output file name | Output file | <sequence>.ealistat |
Additional (Optional) qualifiers | Allowed values | Default | |
(none) | |||
Advanced (Unprompted) qualifiers | Allowed values | Default | |
-additional | Show additional information | Boolean value Yes/No | No |
-fast | Use sampling method | Boolean value Yes/No | No |
#=AU HMMER 2.1.1 #=SQ BAHG_VITSP 1.0000 - - 0..0::0 - #=SQ GLB1_ANABR 1.0000 - - 0..0::0 - #=SQ GLB1_ARTSX 1.0000 - - 0..0::0 - #=SQ GLB1_CALSO 1.0000 - - 0..0::0 - #=SQ GLB1_CHITH 1.0000 - - 0..0::0 - #=SQ GLB1_GLYDI 1.0000 - - 0..0::0 - #=SQ GLB1_LUMTE 1.0000 - - 0..0::0 - #=SQ GLB1_MORMR 1.0000 - - 0..0::0 - #=SQ GLB1_PARCH 1.0000 - - 0..0::0 - #=SQ GLB1_PETMA 1.0000 - - 0..0::0 - #=SQ GLB1_PHESE 1.0000 - - 0..0::0 - #=SQ GLB1_SCAIN 1.0000 - - 0..0::0 - #=SQ GLB1_TYLHE 1.0000 - - 0..0::0 - #=SQ GLB2_ANATR 1.0000 - - 0..0::0 - #=SQ GLB2_CALSO 1.0000 - - 0..0::0 - #=SQ GLB2_CHITH 1.0000 - - 0..0::0 - #=SQ GLB2_LUMTE 1.0000 - - 0..0::0 - #=SQ GLB2_MORMR 1.0000 - - 0..0::0 - #=SQ GLB2_TYLHE 1.0000 - - 0..0::0 - #=SQ GLB3_CHITH 1.0000 - - 0..0::0 - #=SQ GLB3_CHITP 1.0000 - - 0..0::0 - #=SQ GLB3_LAMSP 1.0000 - - 0..0::0 - #=SQ GLB3_MORMR 1.0000 - - 0..0::0 - #=SQ GLB3_MYXGL 1.0000 - - 0..0::0 - #=SQ GLB3_PETMA 1.0000 - - 0..0::0 - #=SQ GLB3_TYLHE 1.0000 - - 0..0::0 - #=SQ GLB4_CHITH 1.0000 - - 0..0::0 - #=SQ GLB4_GLYDI 1.0000 - - 0..0::0 - #=SQ GLB4_LUMTE 1.0000 - - 0..0::0 - #=SQ GLB4_TYLHE 1.0000 - - 0..0::0 - #=SQ GLB5_PETMA 1.0000 - - 0..0::0 - #=SQ GLB6_CHITH 1.0000 - - 0..0::0 - #=SQ GLB7_ARTSX 1.0000 - - 0..0::0 - #=SQ GLB7_CHITH 1.0000 - - 0..0::0 - #=SQ GLB8_CHITH 1.0000 - - 0..0::0 - #=SQ GLB9_CHITH 1.0000 - - 0..0::0 - #=SQ GLBA_ANATR 1.0000 - - 0..0::0 - #=SQ GLBA_SCAIN 1.0000 - - 0..0::0 - #=SQ GLBB_ANATR 1.0000 - - 0..0::0 - #=SQ GLBB_SCAIN 1.0000 - - 0..0::0 - #=SQ GLBC_CAUAR 1.0000 - - 0..0::0 - #=SQ GLBC_CHITH 1.0000 - - 0..0::0 - #=SQ GLBD_CAUAR 1.0000 - - 0..0::0 - #=SQ GLBD_CHITH 1.0000 - - 0..0::0 - #=SQ GLBE_CHITH 1.0000 - - 0..0::0 - #=SQ GLBF_CHITH 1.0000 - - 0..0::0 - #=SQ GLBH_CHITH 1.0000 - - 0..0::0 - #=SQ GLBI_CHITP 1.0000 - - 0..0::0 - #=SQ GLBM_ANATR 1.0000 - - 0..0::0 - [Part of this file has been deleted for brevity] MYG_GALJA ................... MYG_GLOME ................... MYG_GORBE ................... MYG_GRAGE ................... MYG_HALGR ................... MYG_HETPO ................... MYG_HORSE ................... MYG_HUMAN ................... MYG_HYLAG ................... MYG_INIGE ................... MYG_KOGSI ................... MYG_LAGLA ................... MYG_LAGMA ................... MYG_LEPMU ................... MYG_LOXAF ................... MYG_LUTLU ................... MYG_LYCPI ................... MYG_MACFA ................... MYG_MACRU ................... MYG_MEGNO ................... MYG_MELME ................... MYG_MESCA ................... MYG_MOUSE ................... MYG_MUSAN ................... MYG_NYCCO ................... MYG_OCHPR ................... MYG_ORCOR ................... MYG_ORNAN ................... MYG_ORYAF ................... MYG_PANTR ................... MYG_PAPAN ................... MYG_PERPO ................... MYG_PHOPH ................... MYG_PHYCA ................... MYG_PIG ................... MYG_PONPY ................... MYG_PROGU ................... MYG_RABIT ................... MYG_ROUAE ................... MYG_SAISC ................... MYG_SHEEP ................... MYG_SPAEH ................... MYG_TACAC ................... MYG_THUAL ................... MYG_TUPGL ................... MYG_TURTR ................... MYG_VARVA ................... MYG_VULCH ................... MYG_ZALCA ................... MYG_ZIPCA ................... |
alistat 1.5m, Sept 1997 Format: SELEX alignment Number of sequences: 630 Total # residues: 91425 Smallest: 121 Largest: 162 Average length: 145.1 Alignment length: 469 Average identity: 25% Most related pair: 99% Most unrelated pair: 0% Most distant seq: 6% |
Program name | Description |
---|---|
ehmmalign | Align sequences with an HMM |
ehmmbuild | Build HMM |
ehmmcalibrate | Calibrate a hidden Markov model |
ehmmconvert | Convert between HMM formats |
ehmmemit | Extract HMM sequences |
ehmmfetch | Extract HMM from a database |
ehmmindex | Index an HMM database |
ehmmpfam | Align single sequence with an HMM |
ehmmsearch | Search sequence database with an HMM |
Although we take every care to ensure that the results of the EMBOSS version are identical to those from the original package, we recommend that you check your inputs give the same results in both versions before publication.
Please report all bugs in the EMBOSS version to the EMBOSS bug team, not to the original author.