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Packages that use IntegerAlphabet.IntegerSymbol | |
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org.biojava.bio.program.phred | Parser for Phred output |
org.biojava.bio.symbol | Representation of the Symbols that make up a sequence, and locations within them. |
Uses of IntegerAlphabet.IntegerSymbol in org.biojava.bio.program.phred |
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Methods in org.biojava.bio.program.phred that return IntegerAlphabet.IntegerSymbol | |
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static IntegerAlphabet.IntegerSymbol |
PhredTools.integerSymbolFromPhred(Symbol phredSym)
Retrives the IntegerSymbol component of the Phred BasisSymbol from the PHRED alphabet. |
Methods in org.biojava.bio.program.phred with parameters of type IntegerAlphabet.IntegerSymbol | |
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static double |
PhredTools.pFromQuality(IntegerAlphabet.IntegerSymbol quality)
Calculates the probability of an error from the quality score via the formula P_e = 10**(QV/-10) |
Uses of IntegerAlphabet.IntegerSymbol in org.biojava.bio.symbol |
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Methods in org.biojava.bio.symbol that return IntegerAlphabet.IntegerSymbol | |
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IntegerAlphabet.IntegerSymbol |
IntegerAlphabet.getSymbol(int val)
Retrieve the Symbol for an int. |
IntegerAlphabet.IntegerSymbol |
IntegerAlphabet.SubIntegerAlphabet.getSymbol(int val)
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