org.biojava.bio.structure.align.pairwise
Interface Alignable
- All Known Implementing Classes:
- StrCompAlignment
public interface Alignable
getRows
int getRows()
getCols
int getCols()
getAligMat
AligMatEl[][] getAligMat()
setAligMat
void setAligMat(AligMatEl[][] alignmentMatrix)
getGapExtCol
float getGapExtCol()
setGapExtCol
void setGapExtCol(float penalty)
getGapExtRow
float getGapExtRow()
setGapExtRow
void setGapExtRow(float penalty)
getGapOpenCol
float getGapOpenCol()
setGapOpenCol
void setGapOpenCol(float penalty)
getGapOpenRow
float getGapOpenRow()
setGapOpenRow
void setGapOpenRow(float penalty)
setScore
void setScore(float score)
getScore
float getScore()
getPathSize
int getPathSize()
setPathSize
void setPathSize(int pathSize)
setPath
void setPath(IndexPair[] path)
getPath
IndexPair[] getPath()