seq
Class MotifFinder2

java.lang.Object
  extended by seq.MotifFinder2

public class MotifFinder2
extends Object

Modified version of MotifFinder.java This program will search a fasta file for a motif. It will match motifs and/or sequences containing ambiguity symbols.

Author:
Matthew Pocock, Andy Hammer, Mark Schreiber

Constructor Summary
MotifFinder2()
           
 
Method Summary
static void main(String[] args)
          Run the Program
 
Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
 

Constructor Detail

MotifFinder2

public MotifFinder2()
Method Detail

main

public static void main(String[] args)
                 throws org.biojava.bio.BioException,
                        IOException
Run the Program

Parameters:
args - a motif (eg acgtnnc) and a fasta file
Throws:
org.biojava.bio.BioException
IOException