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PROSITE

Prosite is a database of regular expressions that match potentially diagnostic regions for structural/functional classification of proteins. EMBOSS needs this database for the patmatmotifs program.

PROSITE can be obtained via anonymous FTP.[*]

You may need to create a PROSITE subdirectory under data in the EMBOSS installation directory.

Then run PROSEXTRACT to build the EMBOSS Prosite database.


% prosextract
Builds the PROSITE motif database for patmatmotifs to search
Enter name of prosite directory: /data/prosite
PROSITE is now integrated into your EMBOSS installation.



EMBnet Manager
8/17/2000