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EMBOSS: dichet |
% dichet**************** EDIT HERE ****************
Mandatory qualifiers (* if not always prompted): [-inf] infile Name of raw input file (dictionary of heterogen groups) [-dogrep] bool Search a directory of files with keywords? [-outf] outfile Name of output file * -path string Directory to search with keywords * -extn string Exension of files to search in above directory Optional qualifiers: (none) Advanced qualifiers: (none) General qualifiers: -help bool report command line options. More information on associated and general qualifiers can be found with -help -verbose |
Mandatory qualifiers | Allowed values | Default | |
---|---|---|---|
[-inf] (Parameter 1) |
Name of raw input file (dictionary of heterogen groups) | Input file | Required |
[-dogrep] (Parameter 2) |
Search a directory of files with keywords? | Yes/No | No |
[-outf] (Parameter 3) |
Name of output file | Output file | <sequence>.dichet |
-path | Directory to search with keywords | Any string is accepted | ./ |
-extn | Exension of files to search in above directory | Any string is accepted | .ent |
Optional qualifiers | Allowed values | Default | |
(none) | |||
Advanced qualifiers | Allowed values | Default | |
(none) |
Program name | Description |
---|---|
contacts | Reads coordinate files and writes contact files |
interface | Reads coordinate files and writes inter-chain contact files |
psiblasts | Runs PSI-BLAST given scopalign alignments |
scopalign | Generate alignments for SCOP families |
seqsort | Removes ambiguities from a set of hits resulting from a database search |
siggen | Generates a sparse protein signature |
sigscan | Scans a sparse protein signature against swissprot |