bio-0.4.6: A bioinformatics library Source code Contents Index

Bio.GFF3.SGD

Documentation

chromosomes :: FeatureHierSequences -> [Feature] Source

genes :: FeatureHierSequences -> [Feature] Source

rRNAs :: FeatureHierSequences -> [Feature] Source

sortExons :: (Error e, MonadError e m) => [Feature] -> m [Feature] Source

geneSequence :: (Error e, MonadError e m) => FeatureHierSequences -> Feature -> m (Sequence a) Source

geneSeqLoc :: (Error e, MonadError e m) => FeatureHierSequences -> Feature -> m SeqLoc Source

geneCDSes :: FeatureHierSequences -> Feature -> [Feature] Source

noncodingSequence :: (Error e, MonadError e m) => FeatureHierSequences -> Feature -> m (Sequence a) Source

noncodingSeqLoc :: (Error e, MonadError e m) => FeatureHierSequences -> Feature -> m SeqLoc Source

noncodingExons :: FeatureHierSequences -> Feature -> [Feature] Source

namedSLM :: FeatureHierSequences -> SeqLocMap Feature Source

geneCDS_SLM :: (Error e, MonadError e m) => FeatureHierSequences -> m (SeqLocMap Feature) Source

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