EMBOSS: SEQUENCE EDITING


Program nameDescription
cutseq Removes a specified section from a sequence
descseq Alter the name or description of a sequence
extractseq Extract regions from a sequence
maskfeat Mask off features of a sequence
maskseq Mask off regions of a sequence
megamerger Merge two large overlapping nucleic acid sequences
merger Merge two overlapping nucleic acid sequences
newseq Type in a short new sequence
noreturn Removes carriage return from ASCII files
nthseq Writes one sequence from a multiple set of sequences
pasteseq Insert one sequence into another
revseq Reverse and complement a sequence
splitter Split a sequence into (overlapping) smaller sequences
trimseq Trim ambiguous bits off the ends of sequences
vectorstrip Strips out DNA between a pair of vector sequences