EMBOSS: DNA SEQUENCE FEATURES


Program nameDescription
chaos Create a chaos game representation plot for a sequence
cpgplot Plot CpG rich areas
cpgreport Reports all CpG rich regions
diffseq Find differences (SNPs) between nearly identical sequences
dotmatcher Displays a thresholded dotplot of two sequences
dotpath Displays a non-overlapping wordmatch dotplot of two sequences
dottup Displays a wordmatch dotplot of two sequences
einverted Finds DNA inverted repeats
equicktandem Finds tandem repeats
etandem Looks for tandem repeats in a nucleotide sequence
isochore Plots isochores in large DNA sequences
newcpgreport Report CpG rich areas
newcpgseek Reports CpG rich regions
palindrome Looks for inverted repeats in a nucleotide sequence
polydot Displays all-against-all dotplots of a set of sequences
redata Search REBASE for enzyme name, references, suppliers etc
restrict Finds restriction enzyme cleavage sites
showseq Display a sequence with features, translation etc
silent Silent mutation restriction enzyme scan
tfscan Scans DNA sequences for transcription factors