EMBOSS: profit


Program profit

Function

Scan a sequence or database with a matrix or profile

Description

Usage

Here is a sample session with profit.

% profit

Command line arguments

   Mandatory qualifiers:
  [-infile]            infile     Profile or matrix file
  [-sequence]          seqall     Sequence database USA
  [-outfile]           outfile    Output file name

   Optional qualifiers: (none)
   Advanced qualifiers: (none)

Mandatory qualifiers Allowed values Default
[-infile]
(Parameter 1)
Profile or matrix file Input file Required
[-sequence]
(Parameter 2)
Sequence database USA Readable sequence(s) Required
[-outfile]
(Parameter 3)
Output file name Output file <sequence>.profit
Optional qualifiers Allowed values Default
(none)
Advanced qualifiers Allowed values Default
(none)

Input file format

Output file format

Data files

Notes

References

Warnings

Diagnostic Error Messages

Exit status

Known bugs

See also

Program nameDescription
consCreates a consensus from multiple alignments
prophecyCreates matrices/profiles from multiple alignments
prophetGapped alignment for profiles

Author(s)

This application was written by Alan Bleasby (ableasby@hgmp.mrc.ac.uk)

History

Target users

This program is intended to be used by everyone and everything, from naive users to embedded scripts.

Comments