Program name | Description |
chaos |
Create a chaos game representation plot for a sequence
|
cpgplot |
Plot CpG rich areas
|
cpgreport |
Reports all CpG rich regions
|
diffseq |
Find differences (SNPs) between nearly identical sequences
|
dotmatcher |
Displays a thresholded dotplot of two sequences
|
dotpath |
Displays a non-overlapping wordmatch dotplot of two sequences
|
dottup |
Displays a wordmatch dotplot of two sequences
|
einverted |
Finds DNA inverted repeats
|
equicktandem |
Finds tandem repeats
|
etandem |
Looks for tandem repeats in a nucleotide sequence
|
isochore |
Plots isochores in large DNA sequences
|
newcpgreport |
Report CpG rich areas
|
newcpgseek |
Reports CpG rich regions
|
palindrome |
Looks for inverted repeats in a nucleotide sequence
|
polydot |
Displays all-against-all dotplots of a set of sequences
|
redata |
Search REBASE for enzyme name, references, suppliers etc
|
restrict |
Finds restriction enzyme cleavage sites
|
showseq |
Display a sequence with features, translation etc
|
silent |
Silent mutation restriction enzyme scan
|
tfscan |
Scans DNA sequences for transcription factors
|