EMBOSS: PROTEIN SEQUENCE FEATURES


Program nameDescription
antigenic Finds antigenic sites in proteins
diffseq Find differences (SNPs) between nearly identical sequences
dotmatcher Displays a thresholded dotplot of two sequences
dotpath Displays a non-overlapping wordmatch dotplot of two sequences
dottup Displays a wordmatch dotplot of two sequences
garnier Predicts protein secondary structure
helixturnhelix Report nucleic acid binding motifs
oddcomp Finds protein sequence regions with a biased composition
pepcoil Predicts coiled coil regions
polydot Displays all-against-all dotplots of a set of sequences
pscan Scans proteins using PRINTS
showseq Display a sequence with features, translation etc
sigcleave Reports protein signal cleavage sites
tmap Displays membrane spanning regions