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EMBOSS: seqretall |
In early pre-release versions of EMBOSS, seqret read only one sequence so this program was needed to read more sequences. We have retained it for compatibility only.
% seqretall Reads and writes (returns) a set of sequences one at a time Input sequence(s): embl:eclac* Output sequence [eclac.fasta]:
Mandatory qualifiers: [-sequence] seqall Sequence database USA [-outseq] seqoutall Output sequence(s) USA Optional qualifiers: (none) Advanced qualifiers: (none) |
Mandatory qualifiers | Allowed values | Default | |
---|---|---|---|
[-sequence] (Parameter 1) |
Sequence database USA | Readable sequence(s) | Required |
[-outseq] (Parameter 2) |
Output sequence(s) USA | Writeable sequence(s) | <sequence>.format |
Optional qualifiers | Allowed values | Default | |
(none) | |||
Advanced qualifiers | Allowed values | Default | |
(none) |
In some cases the output filename will be the same as the input filename, for example if you try to read the output from the example run with seqretall and give no output format.
As seqretall reads only the first sequence before opening the output file it will overwrite the sequences before reading has completed, with unpredictable result. Note that this is not true of seqretset which reads all sequences into memory at startup.
Program name | Description |
---|---|
cirdna | Draws circular maps of DNA constructs |
lindna | Draws linear maps of DNA constructs |
remap | Display a sequence with restriction cut sites, translation etc |
seqret | Reads and writes (returns) sequences |
seqretset | Reads and writes (returns) a set of sequences all at once |
seqretsplit | Reads and writes (returns) sequences |
showfeat | Show features of a sequence |
showseq | Display a sequence with features, translation etc |