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EMBOSS: banana |
The consensus sequence for DNA bending is 5 As and 5 non-As alternating. "N" is an ambiguity code for any base, and "B" is the ambiguity code for "not A" so "BANANA" is itself a bent sequence.
banana embl:rnu68037click here for result (1st page only)
Mandatory qualifiers (* if not always prompted): [-sequence] sequence Sequence USA * -graph graph Graph type Optional qualifiers: -anglesfile datafile angles file -residuesperline integer Number of residues to be displayed on each line -outfile outfile Output file name Advanced qualifiers: -data bool Output as data |
Mandatory qualifiers | Allowed values | Default | |
---|---|---|---|
[-sequence] (Parameter 1) |
Sequence USA | Readable sequence | Required |
-graph | Graph type | EMBOSS has a list of known devices, including postscript, ps, hpgl, hp7470, hp7580, meta, colourps, cps, xwindows, x11, tektronics, tekt, tek4107t, tek, none, null, text, data, xterm | EMBOSS_GRAPHICS value, or x11 |
Optional qualifiers | Allowed values | Default | |
-anglesfile | angles file | Data file | Eangles_tri.dat |
-residuesperline | Number of residues to be displayed on each line | Any integer value | 50 |
-outfile | Output file name | Output file | banana.profile |
Advanced qualifiers | Allowed values | Default | |
-data | Output as data | Yes/No | No |
Program name | Description |
---|---|
btwisted | Calculates the twisting in a B-DNA sequence |
complex | Find the linguistic complexity in nucleotide sequences |
dan | Calculates DNA RNA/DNA melting temperature |
Created 1999/06/09. Last Updated 1999/06/14.