EMBOSS: DNA SEQUENCE COMPOSITION


Program nameDescription
chaos Create a chaos game representation plot for a sequence
chips Codon usage statistics
codcmp Codon usage table comparison
compseq Counts the composition of dimer/trimer/etc words in a sequence
cusp Create a codon usage table
freak Residue/base frequency table or plot
geecee Calculates the fractional GC content of nucleic acid sequences
isochore Plots isochores in large DNA sequences
newcpgreport Report CpG rich areas
newcpgseek Reports CpG rich regions
wobble Wobble base plot
wordcount Counts words of a specified size in a DNA sequence