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ALIGNMENT GLOBAL |
Global sequence alignment
Program name | Description |
---|---|
est2genome | Align EST and genomic DNA sequences |
needle | Needleman-Wunsch global alignment |
stretcher | Finds the best global alignment between two sequences |
esim4 | Align an mRNA to a genomic DNA sequence |
alignrunner | Align sequence pairs in a directory |
comparator | Compare contact scores of two sequence alignments |
contactalign | Damian Counsell's experimental 2.5-D alignment algorithm |
nawalign | Damian Counsell's NW implementation |
nawalignrunner | Nawalign all sequence pairs in a directory |
needlerunner | Needle all sequence pairs in a directory |
scorer | Score alignments using structural alignments |
scorerrunner | SCORER for ordered pairs of substituted seqs |
substitute | Substitute matches into a template |
substituterunner | Run SUBSTITUTE on a directory of traces |