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Packages that use SeqSimilaritySearchResult | |
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org.biojava.bio.program.ssbind | Creation of objects from SAX events using the BioJava BlastLikeDataSetCollection DTD. |
org.biojava.bio.search | Interfaces and classes for representing sequence similarity search results. |
Uses of SeqSimilaritySearchResult in org.biojava.bio.program.ssbind |
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Methods in org.biojava.bio.program.ssbind that return SeqSimilaritySearchResult | |
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SeqSimilaritySearchResult |
BlastLikeSearchBuilder.makeSearchResult()
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Uses of SeqSimilaritySearchResult in org.biojava.bio.search |
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Classes in org.biojava.bio.search that implement SeqSimilaritySearchResult | |
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class |
SequenceDBSearchResult
Deprecated. SimpleSeqSimilaritySearchResult has been made Annotatable and is now functionally identical. |
class |
SimpleSeqSimilaritySearchResult
SimpleSeqSimilaritySearchResult objects represent a
result of a search of a SymbolList against the
sequences within a SequenceDB object. |
Methods in org.biojava.bio.search that return SeqSimilaritySearchResult | |
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SeqSimilaritySearchResult |
SearchBuilder.makeSearchResult()
The makeSearchResult method returns a
SeqSimilaritySearchResult instance created from
accumulated data. |
SeqSimilaritySearchResult |
SeqSimilaritySearcher.search(SymbolList querySeq,
SequenceDB db,
Map searchParameters)
Using this sequence similarity searcher, search with the given sequence against the given sequence database. |
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