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EMBOSS: pdbtosp |
This package is still being developed.
Please ignore this program until further details can be documented.
All further queries should go to Jon Ison. (Jon Ison)
% pdbtosp
Mandatory qualifiers: [-infilea] infile Name of raw swissprot:pdb equivalence file (input) [-outfile] outfile Name of swissprot:pdb equivalence file (output) Optional qualifiers: (none) Advanced qualifiers: (none) General qualifiers: -help bool report command line options. More information on associated and general qualifiers can be found with -help -verbose |
Mandatory qualifiers | Allowed values | Default | |
---|---|---|---|
[-infilea] (Parameter 1) |
Name of raw swissprot:pdb equivalence file (input) | Input file | pdbtosp.txt |
[-outfile] (Parameter 2) |
Name of swissprot:pdb equivalence file (output) | Output file | Epdbtosp.dat |
Optional qualifiers | Allowed values | Default | |
(none) | |||
Advanced qualifiers | Allowed values | Default | |
(none) |
Program name | Description |
---|---|
cutgextract | Extract data from CUTG |
domainer | Build domain coordinate files |
nrscope | Converts redundant EMBL-format SCOP file to non-redundant one |
printsextract | Extract data from PRINTS |
prosextract | Builds the PROSITE motif database for patmatmotifs to search |
rebaseextract | Extract data from REBASE |
scope | Convert raw scop classification file to embl-like format |
scopparse | Reads raw-, and writes EMBL-like, scop classification files |
seqnr | Converts redundant database results to a non-redundant set of hits |
tfextract | Extract data from TRANSFAC |