AddToSeqLength(const gnSeqI len) | gnFileContig | [inline] |
Clear() | gnFileContig | |
Clone() const | gnFileContig | [inline, virtual] |
GetFileLength() const | gnFileContig | [inline] |
GetFileStartEnd() const | gnFileContig | [inline] |
GetName() const | gnFileContig | [inline] |
GetRepeatSeqGapSize() const | gnFileContig | [inline] |
GetSectLength(gnContigSection i) const | gnFileContig | [inline] |
GetSectStartEnd(const gnContigSection i) const | gnFileContig | [inline] |
GetSeqLength() const | gnFileContig | [inline] |
gnClone() | gnClone | [inline] |
gnFileContig() | gnFileContig | |
gnFileContig(string nameStr, const uint64 pos, const uint64 len) | gnFileContig | |
gnFileContig(const gnFileContig &fc) | gnFileContig | |
HasRepeatSeqGap() const | gnFileContig | [inline] |
m_fileStartEnd | gnFileContig | [private] |
m_name | gnFileContig | [private] |
m_repeatSeqGap | gnFileContig | [private] |
m_repeatSeqGapSize | gnFileContig | [private] |
m_seqLength | gnFileContig | [private] |
m_startEndArray | gnFileContig | [private] |
SetFileEnd(const uint64 e) | gnFileContig | [inline] |
SetFileStart(const uint64 s) | gnFileContig | [inline] |
SetFileStartEnd(const pair< uint64, uint64 > se) | gnFileContig | [inline] |
SetName(string nameStr) | gnFileContig | [inline] |
SetRepeatGapSize(const uint64 gapSize) | gnFileContig | |
SetRepeatSeqGap(const boolean rsg) | gnFileContig | [inline] |
SetRepeatSeqGapSize(const pair< uint64, uint64 > rsgSize) | gnFileContig | [inline] |
SetRepeatSeqSize(const uint64 seqSize) | gnFileContig | |
SetSectEnd(const gnContigSection i, const uint64 e) | gnFileContig | [inline] |
SetSectStart(const gnContigSection i, const uint64 s) | gnFileContig | [inline] |
SetSectStartEnd(const gnContigSection i, const pair< uint64, uint64 > se) | gnFileContig | [inline] |
SetSeqLength(const gnSeqI len) | gnFileContig | [inline] |
~gnClone() | gnClone | [inline, virtual] |
~gnFileContig() | gnFileContig | |