org.biojava.bio.dp
Class XmlMarkovModel

java.lang.Object
  |
  +--org.biojava.bio.dp.XmlMarkovModel

public class XmlMarkovModel
extends java.lang.Object


Constructor Summary
XmlMarkovModel()
           
 
Method Summary
static WeightMatrix readMatrix(org.w3c.dom.Element root)
           
static MarkovModel readModel(org.w3c.dom.Element root)
           
static void writeMatrix(WeightMatrix matrix, java.io.PrintStream out)
           
static void writeModel(MarkovModel model, java.io.PrintStream out)
           
 
Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
 

Constructor Detail

XmlMarkovModel

public XmlMarkovModel()
Method Detail

readMatrix

public static WeightMatrix readMatrix(org.w3c.dom.Element root)
                               throws IllegalSymbolException,
                                      IllegalAlphabetException,
                                      BioException

readModel

public static MarkovModel readModel(org.w3c.dom.Element root)
                             throws BioException,
                                    IllegalSymbolException,
                                    IllegalAlphabetException

writeMatrix

public static void writeMatrix(WeightMatrix matrix,
                               java.io.PrintStream out)
                        throws java.lang.Exception

writeModel

public static void writeModel(MarkovModel model,
                              java.io.PrintStream out)
                       throws java.lang.Exception