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EMBOSS: noreturn |
Unix files have a hidden character called 'new line' at the end of every line.
PC files have two hidden characters called 'carriage return' and then 'new line' at the end of every line.
When files are transferred from PC machines to Unix machines, it is often useful to convert the file from the PC format to the Unix format, otherwise commands like 'more', to display the file, and text editors can become confused.
This simple utility removes 'carriage return' characters from such files, converting them from PC format to Unix format text files.
EMBOSS programs can read in both PC and Unix text file formats, so it is not necessary for you to use this utility all of the time.
% noreturn Input file: abc.dat Output file [abc.noreturn]:
Mandatory qualifiers: [-infile] infile (no help text) infile value [-outfile] outfile Output file name Optional qualifiers: (none) Advanced qualifiers: (none) General qualifiers: -help bool report command line options. More information on associated and general qualifiers can be found with -help -verbose |
Mandatory qualifiers | Allowed values | Default | |
---|---|---|---|
[-infile] (Parameter 1) |
(no help text) infile value | Input file | Required |
[-outfile] (Parameter 2) |
Output file name | Output file | <sequence>.noreturn |
Optional qualifiers | Allowed values | Default | |
(none) | |||
Advanced qualifiers | Allowed values | Default | |
(none) |
Program name | Description |
---|---|
biosed | Replace or delete sequence sections |
cutseq | Removes a specified section from a sequence |
degapseq | Removes gap characters from sequences |
descseq | Alter the name or description of a sequence |
entret | Reads and writes (returns) flatfile entries |
extractfeat | Extract features from a sequence |
extractseq | Extract regions from a sequence |
infoseq | Displays some simple information about sequences |
listor | Writes a list file of the logical OR of two sets of sequences |
maskfeat | Mask off features of a sequence |
maskseq | Mask off regions of a sequence |
newseq | Type in a short new sequence |
notseq | Excludes a set of sequences and writes out the remaining ones |
nthseq | Writes one sequence from a multiple set of sequences |
pasteseq | Insert one sequence into another |
revseq | Reverse and complement a sequence |
seqret | Reads and writes (returns) sequences |
seqretall | Reads and writes (returns) a set of sequences one at a time |
seqretset | Reads and writes (returns) a set of sequences all at once |
seqretsplit | Reads and writes (returns) sequences in individual files |
splitter | Split a sequence into (overlapping) smaller sequences |
swissparse | Retrieves sequences from swissprot using keyword search |
trimest | Trim poly-A tails off EST sequences |
trimseq | Trim ambiguous bits off the ends of sequences |
vectorstrip | Strips out DNA between a pair of vector sequences |