A B C D E F G H I J K L M N P R S T U W

A

addDirectoriesToList(DefaultListModel) - Method in class uk.ac.mrc.hgmp.embreo.filemgr.EmbreoFileList
Adds the directories to a list
addFilesToList(DefaultListModel) - Method in class uk.ac.mrc.hgmp.embreo.filemgr.EmbreoFileList
Adds the files to a list
addObject(String, String) - Method in class uk.ac.mrc.hgmp.embreo.filemgr.EmbreoLocalTree
Adding a file (or directory) to the file tree manager.
addResult(EmbreoResult) - Method in class uk.ac.mrc.hgmp.embreo.EmbreoPendingResults
 

B

bytecontents() - Method in class uk.ac.mrc.hgmp.embreo.filemgr.EmbreoLocalGet
The contenets, explicitly as a byte[] array

C

CenterFrame(JFrame) - Static method in class uk.ac.mrc.hgmp.embreo.EmbreoUtils
Locate a frame centrally on the screen
CenterWindow(JWindow) - Static method in class uk.ac.mrc.hgmp.embreo.EmbreoUtils
Locate a window centrally on the screen
complete() - Method in class uk.ac.mrc.hgmp.embreo.EmbreoResult
 
contents() - Method in class uk.ac.mrc.hgmp.embreo.filemgr.EmbreoFileGet
the contents of the file
contents() - Method in class uk.ac.mrc.hgmp.embreo.filemgr.EmbreoLocalGet
the contents of the file
createNewFolder(File) - Method in class uk.ac.mrc.hgmp.embreo.filemgr.WindowsAltFileSystemView
creates a new folder with a default folder name.
createTreeModel(String) - Method in class uk.ac.mrc.hgmp.embreo.filemgr.EmbreoFileTree
 
createTreeModel(String) - Method in class uk.ac.mrc.hgmp.embreo.filemgr.EmbreoLocalTree
 

D

descriptionHash() - Method in class uk.ac.mrc.hgmp.embreo.EmbreoPendingResults
 
dirVector() - Method in class uk.ac.mrc.hgmp.embreo.filemgr.EmbreoFileList
Gets the list of directories as a Vector
doneEverything(String) - Method in class uk.ac.mrc.hgmp.embreo.EmbreoStartup
Finish the progress bar and label
doneSomething(String) - Method in class uk.ac.mrc.hgmp.embreo.EmbreoStartup
Update the progress bar and label
dragDropEnd(DragSourceDropEvent) - Method in class uk.ac.mrc.hgmp.embreo.filemgr.EmbreoFileTree
 
dragDropEnd(DragSourceDropEvent) - Method in class uk.ac.mrc.hgmp.embreo.filemgr.EmbreoLocalTree
 
dragEnter(DragSourceDragEvent) - Method in class uk.ac.mrc.hgmp.embreo.filemgr.EmbreoFileTree
 
dragEnter(DragSourceDragEvent) - Method in class uk.ac.mrc.hgmp.embreo.filemgr.EmbreoLocalTree
 
dragEnter(DropTargetDragEvent) - Method in class uk.ac.mrc.hgmp.embreo.filemgr.EmbreoFileTree
 
dragEnter(DropTargetDragEvent) - Method in class uk.ac.mrc.hgmp.embreo.filemgr.EmbreoLocalTree
 
dragExit(DragSourceEvent) - Method in class uk.ac.mrc.hgmp.embreo.filemgr.EmbreoFileTree
 
dragExit(DragSourceEvent) - Method in class uk.ac.mrc.hgmp.embreo.filemgr.EmbreoLocalTree
 
dragExit(DropTargetEvent) - Method in class uk.ac.mrc.hgmp.embreo.filemgr.EmbreoFileTree
 
dragExit(DropTargetEvent) - Method in class uk.ac.mrc.hgmp.embreo.filemgr.EmbreoLocalTree
 
dragGestureRecognized(DragGestureEvent) - Method in class uk.ac.mrc.hgmp.embreo.filemgr.EmbreoFileTree
 
dragGestureRecognized(DragGestureEvent) - Method in class uk.ac.mrc.hgmp.embreo.filemgr.EmbreoLocalTree
 
dragOver(DragSourceDragEvent) - Method in class uk.ac.mrc.hgmp.embreo.filemgr.EmbreoFileTree
 
dragOver(DragSourceDragEvent) - Method in class uk.ac.mrc.hgmp.embreo.filemgr.EmbreoLocalTree
 
dragOver(DropTargetDragEvent) - Method in class uk.ac.mrc.hgmp.embreo.filemgr.EmbreoFileTree
 
dragOver(DropTargetDragEvent) - Method in class uk.ac.mrc.hgmp.embreo.filemgr.EmbreoLocalTree
 
drop(DropTargetDropEvent) - Method in class uk.ac.mrc.hgmp.embreo.filemgr.EmbreoFileTree
 
drop(DropTargetDropEvent) - Method in class uk.ac.mrc.hgmp.embreo.filemgr.EmbreoLocalTree
 
dropActionChanged(DragSourceDragEvent) - Method in class uk.ac.mrc.hgmp.embreo.filemgr.EmbreoFileTree
 
dropActionChanged(DragSourceDragEvent) - Method in class uk.ac.mrc.hgmp.embreo.filemgr.EmbreoLocalTree
 
dropActionChanged(DropTargetDragEvent) - Method in class uk.ac.mrc.hgmp.embreo.filemgr.EmbreoFileTree
 
dropActionChanged(DropTargetDragEvent) - Method in class uk.ac.mrc.hgmp.embreo.filemgr.EmbreoLocalTree
 

E

editFrame() - Method in class uk.ac.mrc.hgmp.embreo.EmbreoParams
Generates a frame that allows the user to modify selected parameters from the GUI
elements() - Method in class uk.ac.mrc.hgmp.embreo.EmbreoAppList
Gives the returned elements of the embreo request
elements() - Method in class uk.ac.mrc.hgmp.embreo.EmbreoGroupList
The elements of the embreo response hash
elements() - Method in class uk.ac.mrc.hgmp.embreo.EmbreoResList
 
elements() - Method in class uk.ac.mrc.hgmp.embreo.EmbreoRun
 
elements() - Method in class uk.ac.mrc.hgmp.embreo.filemgr.EmbreoFileRequest
The elements of the returned results hash
EmbreoACD - class uk.ac.mrc.hgmp.embreo.EmbreoACD.
 
EmbreoACD(String, EmbreoParams) - Constructor for class uk.ac.mrc.hgmp.embreo.EmbreoACD
Retrieve an ACD file using soap
EmbreoAnnotate - class uk.ac.mrc.hgmp.embreo.EmbreoAnnotate.
 
EmbreoAnnotate(EmbreoParams, String, Hashtable, JTabbedPane) - Constructor for class uk.ac.mrc.hgmp.embreo.EmbreoAnnotate
Create an editor window to edit the annotation and update it on the server
EmbreoAppList - class uk.ac.mrc.hgmp.embreo.EmbreoAppList.
 
EmbreoAppList(String, EmbreoParams) - Constructor for class uk.ac.mrc.hgmp.embreo.EmbreoAppList
Retrieve the list of available applications from an Embreo Server
EmbreoAuthException - exception uk.ac.mrc.hgmp.embreo.EmbreoAuthException.
 
EmbreoAuthException() - Constructor for class uk.ac.mrc.hgmp.embreo.EmbreoAuthException
Indicates that authentication against the embreo server failed
EmbreoAuthException(String) - Constructor for class uk.ac.mrc.hgmp.embreo.EmbreoAuthException
Indicates that authentication against the embreo server failed
EmbreoAuthPopup - class uk.ac.mrc.hgmp.embreo.EmbreoAuthPopup.
 
EmbreoAuthPopup(EmbreoParams, JFrame) - Constructor for class uk.ac.mrc.hgmp.embreo.EmbreoAuthPopup
Display a popup asking the user to enter their username and password
EmbreoAuthPrompt - class uk.ac.mrc.hgmp.embreo.EmbreoAuthPrompt.
 
EmbreoAuthPrompt(EmbreoParams) - Constructor for class uk.ac.mrc.hgmp.embreo.EmbreoAuthPrompt
Create a window with the prompt information
EmbreoException - exception uk.ac.mrc.hgmp.embreo.EmbreoException.
 
EmbreoException() - Constructor for class uk.ac.mrc.hgmp.embreo.EmbreoException
Something went wrong when communicating with the embreo server.
EmbreoException(String) - Constructor for class uk.ac.mrc.hgmp.embreo.EmbreoException
 
EmbreoFile - class uk.ac.mrc.hgmp.embreo.filemgr.EmbreoFile.
 
EmbreoFile() - Constructor for class uk.ac.mrc.hgmp.embreo.filemgr.EmbreoFile
 
EmbreoFileGet - class uk.ac.mrc.hgmp.embreo.filemgr.EmbreoFileGet.
 
EmbreoFileGet(EmbreoParams, String, String) - Constructor for class uk.ac.mrc.hgmp.embreo.filemgr.EmbreoFileGet
Retrieve a file
EmbreoFileLaunch - class uk.ac.mrc.hgmp.embreo.filemgr.EmbreoFileLaunch.
 
EmbreoFileLaunch(EmbreoParams, String, Object) - Constructor for class uk.ac.mrc.hgmp.embreo.filemgr.EmbreoFileLaunch
Ask the OS to open a file.
EmbreoFileList - class uk.ac.mrc.hgmp.embreo.filemgr.EmbreoFileList.
 
EmbreoFileList(EmbreoParams, String, String) - Constructor for class uk.ac.mrc.hgmp.embreo.filemgr.EmbreoFileList
Retrieves a directory listing from an embreo server.
EmbreoFileListView - class uk.ac.mrc.hgmp.embreo.filemgr.EmbreoFileListView.
 
EmbreoFileListView(EmbreoParams) - Constructor for class uk.ac.mrc.hgmp.embreo.filemgr.EmbreoFileListView
Display a list of files.
EmbreoFileMgr - class uk.ac.mrc.hgmp.embreo.filemgr.EmbreoFileMgr.
 
EmbreoFileMgr(EmbreoParams) - Constructor for class uk.ac.mrc.hgmp.embreo.filemgr.EmbreoFileMgr
Make a file manager
EmbreoFileNode - class uk.ac.mrc.hgmp.embreo.filemgr.EmbreoFileNode.
 
EMBREOFILENODE_FLAVOR - Static variable in class uk.ac.mrc.hgmp.embreo.filemgr.EmbreoFileNode
 
EmbreoFileNode(EmbreoParams, EmbreoFileRoots, String, EmbreoFileList, String) - Constructor for class uk.ac.mrc.hgmp.embreo.filemgr.EmbreoFileNode
 
EmbreoFilePut - class uk.ac.mrc.hgmp.embreo.filemgr.EmbreoFilePut.
 
EmbreoFilePut(EmbreoParams, String, String, Object) - Constructor for class uk.ac.mrc.hgmp.embreo.filemgr.EmbreoFilePut
Put a file to an embreo server
EmbreoFileRequest - class uk.ac.mrc.hgmp.embreo.filemgr.EmbreoFileRequest.
 
EmbreoFileRequest(EmbreoParams, String) - Constructor for class uk.ac.mrc.hgmp.embreo.filemgr.EmbreoFileRequest
A file request with no arguments.
EmbreoFileRequest(EmbreoParams, String, Vector) - Constructor for class uk.ac.mrc.hgmp.embreo.filemgr.EmbreoFileRequest
A file request with arguments.
EmbreoFileRoots - class uk.ac.mrc.hgmp.embreo.filemgr.EmbreoFileRoots.
 
EmbreoFileRoots(EmbreoParams) - Constructor for class uk.ac.mrc.hgmp.embreo.filemgr.EmbreoFileRoots
Retrieve the list of available filesystem roots
EmbreoFileSave - class uk.ac.mrc.hgmp.embreo.filemgr.EmbreoFileSave.
 
EmbreoFileSave(File, Object, boolean) - Constructor for class uk.ac.mrc.hgmp.embreo.filemgr.EmbreoFileSave
Save a file object to disk.
EmbreoFileTree - class uk.ac.mrc.hgmp.embreo.filemgr.EmbreoFileTree.
 
EmbreoFileTree(EmbreoParams, EmbreoFileRoots) - Constructor for class uk.ac.mrc.hgmp.embreo.filemgr.EmbreoFileTree
Create a JTree representing the files and directories on an embreo server, that supports drag and drop.
EmbreoFileTree(EmbreoParams, EmbreoFileRoots, JPanel) - Constructor for class uk.ac.mrc.hgmp.embreo.filemgr.EmbreoFileTree
Create a JTree representing the files and directories on an embreo server, that supports drag and drop.
EmbreoFileTreePanel - class uk.ac.mrc.hgmp.embreo.filemgr.EmbreoFileTreePanel.
 
EmbreoFileTreePanel(EmbreoParams) - Constructor for class uk.ac.mrc.hgmp.embreo.filemgr.EmbreoFileTreePanel
Creates a panel to contain the directory trees on an embreo server.
EmbreoFileTreePanel(EmbreoParams, JPanel) - Constructor for class uk.ac.mrc.hgmp.embreo.filemgr.EmbreoFileTreePanel
Creates a panel to contain the directory trees on an embreo server.
EmbreoFileView - class uk.ac.mrc.hgmp.embreo.filemgr.EmbreoFileView.
 
EmbreoFileView(EmbreoParams, String, Object) - Constructor for class uk.ac.mrc.hgmp.embreo.filemgr.EmbreoFileView
Display a file in a new frame
EmbreoFileViewPanel - class uk.ac.mrc.hgmp.embreo.filemgr.EmbreoFileViewPanel.
 
EmbreoFileViewPanel(EmbreoParams, JPanel, String, Object) - Constructor for class uk.ac.mrc.hgmp.embreo.filemgr.EmbreoFileViewPanel
Display a file in an existing panel.
EmbreoFrame - class uk.ac.mrc.hgmp.embreo.EmbreoFrame.
 
EmbreoFrame() - Constructor for class uk.ac.mrc.hgmp.embreo.EmbreoFrame
Simple constructor creates a frame with a menubar with File:Close
EmbreoFrame(EmbreoParams, Object) - Constructor for class uk.ac.mrc.hgmp.embreo.EmbreoFrame
Simple constructor creates a frame with a menubar with File:Save and File:Close
EmbreoGroupList - class uk.ac.mrc.hgmp.embreo.EmbreoGroupList.
 
EmbreoGroupList(String, EmbreoParams) - Constructor for class uk.ac.mrc.hgmp.embreo.EmbreoGroupList
Get a list of application groups
EmbreoGroupTree - class uk.ac.mrc.hgmp.embreo.EmbreoGroupTree.
 
EmbreoGroupTree(DefaultMutableTreeNode, EmbreoGroupList) - Constructor for class uk.ac.mrc.hgmp.embreo.EmbreoGroupTree
Create a tree from a group list and add it to the parent node
EmbreoGroupTree(DefaultMutableTreeNode, EmbreoGroupList, EmbreoAppList) - Constructor for class uk.ac.mrc.hgmp.embreo.EmbreoGroupTree
Create a tree from a group list and add it to the parent node
EmbreoHelp - class uk.ac.mrc.hgmp.embreo.EmbreoHelp.
 
EmbreoHelp(String, EmbreoParams) - Constructor for class uk.ac.mrc.hgmp.embreo.EmbreoHelp
Get the help text for an application
EmbreoHelpView - class uk.ac.mrc.hgmp.embreo.EmbreoHelpView.
 
EmbreoHelpView(String, EmbreoParams) - Constructor for class uk.ac.mrc.hgmp.embreo.EmbreoHelpView
Display a help page
EmbreoJList - class uk.ac.mrc.hgmp.embreo.EmbreoJList.
 
EmbreoJList(EmbreoAppList) - Constructor for class uk.ac.mrc.hgmp.embreo.EmbreoJList
Create a Jlist ready to add to a panel
EmbreoJList(EmbreoAppList, DefaultListModel) - Constructor for class uk.ac.mrc.hgmp.embreo.EmbreoJList
Create a Jlist ready to add to a panel
EmbreoListFile - class uk.ac.mrc.hgmp.embreo.EmbreoListFile.
 
EmbreoListFile() - Constructor for class uk.ac.mrc.hgmp.embreo.EmbreoListFile
 
EmbreoLocalGet - class uk.ac.mrc.hgmp.embreo.filemgr.EmbreoLocalGet.
 
EmbreoLocalGet(EmbreoParams, String) - Constructor for class uk.ac.mrc.hgmp.embreo.filemgr.EmbreoLocalGet
Read a file
EmbreoLocalRoots - class uk.ac.mrc.hgmp.embreo.filemgr.EmbreoLocalRoots.
 
EmbreoLocalRoots(EmbreoParams) - Constructor for class uk.ac.mrc.hgmp.embreo.filemgr.EmbreoLocalRoots
Retrieve the list of available filesystem roots
EmbreoLocalTree - class uk.ac.mrc.hgmp.embreo.filemgr.EmbreoLocalTree.
 
EmbreoLocalTree(EmbreoParams, EmbreoLocalRoots) - Constructor for class uk.ac.mrc.hgmp.embreo.filemgr.EmbreoLocalTree
Create a JTree representing the files and directories on the local computer, that supports drag and drop.
EmbreoLocalTree(EmbreoParams, EmbreoLocalRoots, JPanel) - Constructor for class uk.ac.mrc.hgmp.embreo.filemgr.EmbreoLocalTree
Create a JTree representing the files and directories on the local computer, that supports drag and drop.
EmbreoLocalTreePanel - class uk.ac.mrc.hgmp.embreo.filemgr.EmbreoLocalTreePanel.
 
EmbreoLocalTreePanel(EmbreoParams) - Constructor for class uk.ac.mrc.hgmp.embreo.filemgr.EmbreoLocalTreePanel
Creates a panel to contain the directory trees on an embreo server.
EmbreoLocalTreePanel(EmbreoParams, JPanel) - Constructor for class uk.ac.mrc.hgmp.embreo.filemgr.EmbreoLocalTreePanel
Creates a panel to contain the directory trees on an embreo server.
EmbreoLocalView - class uk.ac.mrc.hgmp.embreo.filemgr.EmbreoLocalView.
 
EmbreoLocalView(EmbreoParams, String, EmbreoLocalGet) - Constructor for class uk.ac.mrc.hgmp.embreo.filemgr.EmbreoLocalView
Display a file in a new frame
EmbreoLocalViewPanel - class uk.ac.mrc.hgmp.embreo.filemgr.EmbreoLocalViewPanel.
 
EmbreoLocalViewPanel(EmbreoParams, JPanel, String, EmbreoLocalGet) - Constructor for class uk.ac.mrc.hgmp.embreo.filemgr.EmbreoLocalViewPanel
Display a file in an existing panel.
EmbreoMakeFileSafe - class uk.ac.mrc.hgmp.embreo.EmbreoMakeFileSafe.
 
EmbreoMakeFileSafe(String) - Constructor for class uk.ac.mrc.hgmp.embreo.EmbreoMakeFileSafe
Create a sanitized filename.
EmbreoParams - class uk.ac.mrc.hgmp.embreo.EmbreoParams.
 
EmbreoParams(String) - Constructor for class uk.ac.mrc.hgmp.embreo.EmbreoParams
A constructor taking the name of this particular application as an argument.
EmbreoPendingResults - class uk.ac.mrc.hgmp.embreo.EmbreoPendingResults.
 
EmbreoPendingResults(EmbreoParams) - Constructor for class uk.ac.mrc.hgmp.embreo.EmbreoPendingResults
 
EmbreoPrivateRequest - class uk.ac.mrc.hgmp.embreo.EmbreoPrivateRequest.
 
EmbreoPrivateRequest(EmbreoParams, String) - Constructor for class uk.ac.mrc.hgmp.embreo.EmbreoPrivateRequest
Make a soap call to a private server, using the default service
EmbreoPrivateRequest(EmbreoParams, String, String) - Constructor for class uk.ac.mrc.hgmp.embreo.EmbreoPrivateRequest
Make a soap call to a private server
EmbreoPrivateRequest(EmbreoParams, String, String, Vector) - Constructor for class uk.ac.mrc.hgmp.embreo.EmbreoPrivateRequest
Make a soap call to a private server
EmbreoPrivateRequest(EmbreoParams, String, Vector) - Constructor for class uk.ac.mrc.hgmp.embreo.EmbreoPrivateRequest
Make a soap call to a private server, using the default service
EmbreoPublicRequest - class uk.ac.mrc.hgmp.embreo.EmbreoPublicRequest.
 
EmbreoPublicRequest(EmbreoParams, String) - Constructor for class uk.ac.mrc.hgmp.embreo.EmbreoPublicRequest
Makes a soap call to a public server, using the default service
EmbreoPublicRequest(EmbreoParams, String, String) - Constructor for class uk.ac.mrc.hgmp.embreo.EmbreoPublicRequest
Makes a soap call to a public server
EmbreoPublicRequest(EmbreoParams, String, String, Vector) - Constructor for class uk.ac.mrc.hgmp.embreo.EmbreoPublicRequest
Makes a soap call to a public server
EmbreoPublicRequest(EmbreoParams, String, Vector) - Constructor for class uk.ac.mrc.hgmp.embreo.EmbreoPublicRequest
Makes a soap call to a public server, using the default service
EmbreoResList - class uk.ac.mrc.hgmp.embreo.EmbreoResList.
 
EmbreoResList(EmbreoParams) - Constructor for class uk.ac.mrc.hgmp.embreo.EmbreoResList
Retrieve the list of stored results
EmbreoResList(EmbreoParams, String, String) - Constructor for class uk.ac.mrc.hgmp.embreo.EmbreoResList
Manipulate a dataset.
EmbreoResListView - class uk.ac.mrc.hgmp.embreo.EmbreoResListView.
 
EmbreoResListView(EmbreoParams) - Constructor for class uk.ac.mrc.hgmp.embreo.EmbreoResListView
Display a result set.
EmbreoResListView(EmbreoParams, EmbreoPendingResults) - Constructor for class uk.ac.mrc.hgmp.embreo.EmbreoResListView
Display a result set.
EmbreoResSave - class uk.ac.mrc.hgmp.embreo.EmbreoResSave.
 
EmbreoResSave(EmbreoParams, Hashtable, JFrame) - Constructor for class uk.ac.mrc.hgmp.embreo.EmbreoResSave
Save all the files from a result set
EmbreoResult - class uk.ac.mrc.hgmp.embreo.EmbreoResult.
 
EmbreoResult(String) - Constructor for class uk.ac.mrc.hgmp.embreo.EmbreoResult
 
EmbreoResult(String, String) - Constructor for class uk.ac.mrc.hgmp.embreo.EmbreoResult
 
EmbreoResult(String, String, String) - Constructor for class uk.ac.mrc.hgmp.embreo.EmbreoResult
 
EmbreoResView - class uk.ac.mrc.hgmp.embreo.EmbreoResView.
 
EmbreoResView(String, Hashtable, EmbreoParams) - Constructor for class uk.ac.mrc.hgmp.embreo.EmbreoResView
Display a result set
EmbreoRun - class uk.ac.mrc.hgmp.embreo.EmbreoRun.
 
EmbreoRun(String, String, Hashtable, EmbreoParams) - Constructor for class uk.ac.mrc.hgmp.embreo.EmbreoRun
Executes an application on an Embreo server
EmbreoServiceDesc - class uk.ac.mrc.hgmp.embreo.EmbreoServiceDesc.
 
EmbreoServiceDesc(EmbreoParams) - Constructor for class uk.ac.mrc.hgmp.embreo.EmbreoServiceDesc
Makes a soap call to retrieve the service description array.
EmbreoShowDB - class uk.ac.mrc.hgmp.embreo.EmbreoShowDB.
 
EmbreoShowDB(EmbreoParams) - Constructor for class uk.ac.mrc.hgmp.embreo.EmbreoShowDB
Makes a soap call to retrieve the showdb data
EmbreoStartup - class uk.ac.mrc.hgmp.embreo.EmbreoStartup.
 
EmbreoStartup(EmbreoParams, int) - Constructor for class uk.ac.mrc.hgmp.embreo.EmbreoStartup
Provide a startup monitor
EmbreoTreeCellRenderer - class uk.ac.mrc.hgmp.embreo.EmbreoTreeCellRenderer.
 
EmbreoTreeCellRenderer(EmbreoAppList) - Constructor for class uk.ac.mrc.hgmp.embreo.EmbreoTreeCellRenderer
Add tooltips to cells in a tree.
EmbreoUtils - class uk.ac.mrc.hgmp.embreo.EmbreoUtils.
 
EmbreoUtils() - Constructor for class uk.ac.mrc.hgmp.embreo.EmbreoUtils
 
errorPopup(JFrame, String) - Static method in class uk.ac.mrc.hgmp.embreo.EmbreoUtils
shortcut to create an error popup
explore() - Method in class uk.ac.mrc.hgmp.embreo.filemgr.EmbreoFileNode
 
explore(Hashtable) - Method in class uk.ac.mrc.hgmp.embreo.filemgr.FileNode
 

F

FileNode - class uk.ac.mrc.hgmp.embreo.filemgr.FileNode.
 
FileNode(File, Hashtable) - Constructor for class uk.ac.mrc.hgmp.embreo.filemgr.FileNode
 
fileVector() - Method in class uk.ac.mrc.hgmp.embreo.filemgr.EmbreoFileList
Gets the list of files as a Vector

G

get(Object) - Method in class uk.ac.mrc.hgmp.embreo.EmbreoAppList
Extract an element of the embreo results hash
get(Object) - Method in class uk.ac.mrc.hgmp.embreo.EmbreoGroupList
Retrieves an entry out of the embreo response hash
get(Object) - Method in class uk.ac.mrc.hgmp.embreo.EmbreoResList
 
get(Object) - Method in class uk.ac.mrc.hgmp.embreo.EmbreoRun
 
get(Object) - Method in class uk.ac.mrc.hgmp.embreo.filemgr.EmbreoFileRequest
Gets an element out of the embreo result hash
getAbout() - Method in class uk.ac.mrc.hgmp.embreo.EmbreoServiceDesc
An about string
getAboutUrl() - Method in class uk.ac.mrc.hgmp.embreo.EmbreoServiceDesc
The main URL for this application, ideally the home page
getAcd() - Method in class uk.ac.mrc.hgmp.embreo.EmbreoACD
Return the text of the ACD file
getAllowsChildren() - Method in class uk.ac.mrc.hgmp.embreo.filemgr.EmbreoFileNode
 
getAllowsChildren() - Method in class uk.ac.mrc.hgmp.embreo.filemgr.FileNode
 
getAnIndex(String) - Method in class uk.ac.mrc.hgmp.embreo.filemgr.FileNode
 
getAppersion() - Method in class uk.ac.mrc.hgmp.embreo.EmbreoServiceDesc
The application version
getAppName() - Method in class uk.ac.mrc.hgmp.embreo.EmbreoParams
The application name we were called by
getCurrent() - Method in class uk.ac.mrc.hgmp.embreo.EmbreoPendingResults
Gives which of the available datasets is currently being looked at by the gui
getCurrent() - Method in class uk.ac.mrc.hgmp.embreo.EmbreoResList
Gives which of the available datasets is currently being looked at by the gui
getCurrentDir() - Method in class uk.ac.mrc.hgmp.embreo.filemgr.EmbreoFileRoots
Get the currently selected directory
getCurrentDir() - Method in class uk.ac.mrc.hgmp.embreo.filemgr.EmbreoLocalRoots
Get the currently selected directory
getCurrentMode() - Method in class uk.ac.mrc.hgmp.embreo.EmbreoParams
The current mode.
getCurrentRoot() - Method in class uk.ac.mrc.hgmp.embreo.filemgr.EmbreoFileRoots
Get the currently selected root
getCurrentRoot() - Method in class uk.ac.mrc.hgmp.embreo.filemgr.EmbreoLocalRoots
Get the currently selected root
getDBText() - Method in class uk.ac.mrc.hgmp.embreo.EmbreoShowDB
The output from showdb
getDebug() - Method in class uk.ac.mrc.hgmp.embreo.EmbreoParams
Whether to show debugging information
getDefaultRoot() - Method in class uk.ac.mrc.hgmp.embreo.filemgr.EmbreoFileRoots
Get the default root, if defined, else return null
getDefaultRoot() - Method in class uk.ac.mrc.hgmp.embreo.filemgr.EmbreoLocalRoots
Get the default root, if defined, else return null
getDefaultRootIndex() - Method in class uk.ac.mrc.hgmp.embreo.filemgr.EmbreoFileRoots
Get the index of the default root in the Vector, else return -1
getDefaultRootIndex() - Method in class uk.ac.mrc.hgmp.embreo.filemgr.EmbreoLocalRoots
Get the index of the default root in the Vector, else return -1
getDescription() - Method in class uk.ac.mrc.hgmp.embreo.EmbreoResult
 
getDirectories() - Method in class uk.ac.mrc.hgmp.embreo.filemgr.EmbreoFileList
Gets the list of directories as a String
getDocUrl() - Method in class uk.ac.mrc.hgmp.embreo.EmbreoServiceDesc
The documentation URL for this application, where detailed technical descriptions can be found
getFile() - Method in class uk.ac.mrc.hgmp.embreo.filemgr.FileNode
 
getFilename() - Method in class uk.ac.mrc.hgmp.embreo.filemgr.EmbreoFileTree
 
getFilename() - Method in class uk.ac.mrc.hgmp.embreo.filemgr.EmbreoLocalTree
 
getFiles() - Method in class uk.ac.mrc.hgmp.embreo.filemgr.EmbreoFileList
Gets the list of files as a String
getFormat() - Method in class uk.ac.mrc.hgmp.embreo.EmbreoHelp
The format of the help text
getFsRoot() - Method in class uk.ac.mrc.hgmp.embreo.filemgr.EmbreoFileNode
 
getFullName() - Method in class uk.ac.mrc.hgmp.embreo.filemgr.EmbreoFileNode
 
getHasAnnotation() - Method in class uk.ac.mrc.hgmp.embreo.EmbreoParams
Whether this service supports annotation
getHasBatchMode() - Method in class uk.ac.mrc.hgmp.embreo.EmbreoParams
Whether this service supports batch mode
getHash() - Method in class uk.ac.mrc.hgmp.embreo.EmbreoAppList
Gives the hash returned by the embreo request, in raw form
getHash() - Method in class uk.ac.mrc.hgmp.embreo.EmbreoGroupList
The embreo response hash in raw form
getHash() - Method in class uk.ac.mrc.hgmp.embreo.EmbreoPrivateRequest
The hash returned by the embreo call.
getHash() - Method in class uk.ac.mrc.hgmp.embreo.EmbreoPublicRequest
The hash returned by the embreo call.
getHasInteractiveMode() - Method in class uk.ac.mrc.hgmp.embreo.EmbreoParams
Whether this service supports interactive mode
getHasLocalLaunch() - Method in class uk.ac.mrc.hgmp.embreo.EmbreoParams
Whether this service supports local (native) application launch
getHelpText() - Method in class uk.ac.mrc.hgmp.embreo.EmbreoHelp
The help text returned
getHelpUrl() - Method in class uk.ac.mrc.hgmp.embreo.EmbreoServiceDesc
The URL of the help pages for this application.
getJob() - Method in class uk.ac.mrc.hgmp.embreo.EmbreoResult
 
getName() - Method in class uk.ac.mrc.hgmp.embreo.EmbreoServiceDesc
The name of the service
getNodename() - Method in class uk.ac.mrc.hgmp.embreo.filemgr.EmbreoFileTree
 
getNodename() - Method in class uk.ac.mrc.hgmp.embreo.filemgr.EmbreoLocalTree
 
getNumProgs() - Method in class uk.ac.mrc.hgmp.embreo.EmbreoAppList
How many programs are available
getPrivateServerFailover() - Method in class uk.ac.mrc.hgmp.embreo.EmbreoParams
Return whether we have failover on the private server
getPrivateServers() - Method in class uk.ac.mrc.hgmp.embreo.EmbreoParams
Return a vector containing the list of private servers
getPrivateSoapService() - Method in class uk.ac.mrc.hgmp.embreo.EmbreoParams
Get the name of the private soap service we're using
getPrivateSoapURL() - Method in class uk.ac.mrc.hgmp.embreo.EmbreoParams
Returns the URL of the private soap server
getProgDescription() - Method in class uk.ac.mrc.hgmp.embreo.EmbreoAppList
The program descriptions as a String array
getProgsList() - Method in class uk.ac.mrc.hgmp.embreo.EmbreoAppList
The available programs as a String array
getProject() - Method in class uk.ac.mrc.hgmp.embreo.EmbreoResult
 
getProxyAuthPasswd() - Method in class uk.ac.mrc.hgmp.embreo.EmbreoParams
The password needed to use for the proxy server
getProxyAuthUser() - Method in class uk.ac.mrc.hgmp.embreo.EmbreoParams
The username needed to use for the proxy server
getProxyHost() - Method in class uk.ac.mrc.hgmp.embreo.EmbreoParams
The name of the proxy server
getProxyPortNum() - Method in class uk.ac.mrc.hgmp.embreo.EmbreoParams
The port the proxy server listens on
getPublic() - Method in class uk.ac.mrc.hgmp.embreo.EmbreoServiceDesc
Public status
getPublicServerFailover() - Method in class uk.ac.mrc.hgmp.embreo.EmbreoParams
Return whether we have failover on the public server
getPublicServers() - Method in class uk.ac.mrc.hgmp.embreo.EmbreoParams
Return a vector containing the list of public servers
getPublicSoapService() - Method in class uk.ac.mrc.hgmp.embreo.EmbreoParams
Get the name of the public soap service we're using
getPublicSoapURL() - Method in class uk.ac.mrc.hgmp.embreo.EmbreoParams
Returns the URL of the public soap server
getResult() - Method in class uk.ac.mrc.hgmp.embreo.EmbreoPrivateRequest
The result of the embreo call.
getResult() - Method in class uk.ac.mrc.hgmp.embreo.EmbreoPublicRequest
The result of the embreo call.
getResults() - Method in class uk.ac.mrc.hgmp.embreo.EmbreoResult
 
getRoots() - Method in class uk.ac.mrc.hgmp.embreo.filemgr.EmbreoFileRoots
Get the list of filesystem roots
getRoots() - Method in class uk.ac.mrc.hgmp.embreo.filemgr.EmbreoLocalRoots
Get the list of filesystem roots
getRoots() - Method in class uk.ac.mrc.hgmp.embreo.filemgr.WindowsAltFileSystemView
Returns all root partitians on this system.
getRootVector() - Method in class uk.ac.mrc.hgmp.embreo.filemgr.EmbreoFileRoots
Get the list of filesystem roots
getRootVector() - Method in class uk.ac.mrc.hgmp.embreo.filemgr.EmbreoLocalRoots
Get the list of filesystem roots
getSafeFileName() - Method in class uk.ac.mrc.hgmp.embreo.EmbreoMakeFileSafe
The sanitized filename
getSavedResults() - Method in class uk.ac.mrc.hgmp.embreo.EmbreoParams
Whether this service supports saved results
getServicePasswd() - Method in class uk.ac.mrc.hgmp.embreo.EmbreoParams
Return the password needed for the remote service
getServiceUserName() - Method in class uk.ac.mrc.hgmp.embreo.EmbreoParams
Return the username needed for the remote service
getSoapService() - Method in class uk.ac.mrc.hgmp.embreo.EmbreoParams
Get the name of the soap service we're using
getStatus() - Method in class uk.ac.mrc.hgmp.embreo.EmbreoAnnotate
 
getStatus() - Method in class uk.ac.mrc.hgmp.embreo.EmbreoAppList
The success of the request
getStatus() - Method in class uk.ac.mrc.hgmp.embreo.EmbreoGroupList
The embreo return status
getStatus() - Method in class uk.ac.mrc.hgmp.embreo.EmbreoHelp
The status of the request
getStatus() - Method in class uk.ac.mrc.hgmp.embreo.EmbreoResList
The status of the request
getStatus() - Method in class uk.ac.mrc.hgmp.embreo.EmbreoRun
The status of the request
getStatus() - Method in class uk.ac.mrc.hgmp.embreo.EmbreoShowDB
The status of the request
getStatus() - Method in class uk.ac.mrc.hgmp.embreo.filemgr.EmbreoFileGet
The status of the request
getStatus() - Method in class uk.ac.mrc.hgmp.embreo.filemgr.EmbreoFilePut
The status of the request
getStatus() - Method in class uk.ac.mrc.hgmp.embreo.filemgr.EmbreoFileRequest
The status of the request
getStatus() - Method in class uk.ac.mrc.hgmp.embreo.filemgr.EmbreoLocalGet
The status of the request
getStatusMsg() - Method in class uk.ac.mrc.hgmp.embreo.EmbreoAnnotate
 
getStatusMsg() - Method in class uk.ac.mrc.hgmp.embreo.EmbreoAppList
A status message from the server.
getStatusMsg() - Method in class uk.ac.mrc.hgmp.embreo.EmbreoGroupList
The embreo status message
getStatusMsg() - Method in class uk.ac.mrc.hgmp.embreo.EmbreoHelp
A status message
getStatusMsg() - Method in class uk.ac.mrc.hgmp.embreo.EmbreoResList
A status message
getStatusMsg() - Method in class uk.ac.mrc.hgmp.embreo.EmbreoRun
A status message
getStatusMsg() - Method in class uk.ac.mrc.hgmp.embreo.EmbreoShowDB
A status message
getStatusMsg() - Method in class uk.ac.mrc.hgmp.embreo.filemgr.EmbreoFileGet
A status message
getStatusMsg() - Method in class uk.ac.mrc.hgmp.embreo.filemgr.EmbreoFilePut
A status message
getStatusMsg() - Method in class uk.ac.mrc.hgmp.embreo.filemgr.EmbreoFileRequest
A status message
getStatusMsg() - Method in class uk.ac.mrc.hgmp.embreo.filemgr.EmbreoLocalGet
A status message
getToolTipText(MouseEvent) - Method in class uk.ac.mrc.hgmp.embreo.EmbreoJList
 
getTransferData(DataFlavor) - Method in class uk.ac.mrc.hgmp.embreo.filemgr.EmbreoFileNode
 
getTransferData(DataFlavor) - Method in class uk.ac.mrc.hgmp.embreo.filemgr.FileNode
 
getTransferDataFlavors() - Method in class uk.ac.mrc.hgmp.embreo.filemgr.EmbreoFileNode
implements Transferable interface
getTransferDataFlavors() - Method in class uk.ac.mrc.hgmp.embreo.filemgr.FileNode
implements Transferable interface
getTreeCellRendererComponent(JTree, Object, boolean, boolean, boolean, int, boolean) - Method in class uk.ac.mrc.hgmp.embreo.EmbreoTreeCellRenderer
 
getTreeModel() - Method in class uk.ac.mrc.hgmp.embreo.filemgr.EmbreoFileTree
 
getTreeModel() - Method in class uk.ac.mrc.hgmp.embreo.filemgr.EmbreoLocalTree
 
getUseAuth() - Method in class uk.ac.mrc.hgmp.embreo.EmbreoParams
Whether the main service requires authentication
getUseProxy() - Method in class uk.ac.mrc.hgmp.embreo.EmbreoParams
Whether it is necessary to use a proxy server
getUseProxy(String) - Method in class uk.ac.mrc.hgmp.embreo.EmbreoParams
Whether it is necessary to use a proxy server for a given URL
getUseProxyAuth() - Method in class uk.ac.mrc.hgmp.embreo.EmbreoParams
Whether we have to authenticate with the proxy to use it
getUseVNC() - Method in class uk.ac.mrc.hgmp.embreo.EmbreoParams
Whether this service uses VNC for X display
getUseX11() - Method in class uk.ac.mrc.hgmp.embreo.EmbreoParams
Whether this service requires X for display
getVal(String) - Method in class uk.ac.mrc.hgmp.embreo.EmbreoPrivateRequest
Gets an element out of the embreo result hash
getVal(String) - Method in class uk.ac.mrc.hgmp.embreo.EmbreoPublicRequest
Gets an element out of the embreo result hash
getVersion() - Method in class uk.ac.mrc.hgmp.embreo.EmbreoServiceDesc
The application version
getX11display() - Method in class uk.ac.mrc.hgmp.embreo.EmbreoParams
Get the X display name

H

hash() - Method in class uk.ac.mrc.hgmp.embreo.EmbreoResList
 
hash() - Method in class uk.ac.mrc.hgmp.embreo.EmbreoRun
The results
hash() - Method in class uk.ac.mrc.hgmp.embreo.filemgr.EmbreoFileRequest
The returned results
hasResults() - Method in class uk.ac.mrc.hgmp.embreo.EmbreoResult
 

I

infoPopup(JFrame, String) - Static method in class uk.ac.mrc.hgmp.embreo.EmbreoUtils
shortcut to create an informational popup
isCompleted() - Method in class uk.ac.mrc.hgmp.embreo.EmbreoResult
 
isDataFlavorSupported(DataFlavor) - Method in class uk.ac.mrc.hgmp.embreo.filemgr.EmbreoFileNode
 
isDataFlavorSupported(DataFlavor) - Method in class uk.ac.mrc.hgmp.embreo.filemgr.FileNode
 
isDirectory() - Method in class uk.ac.mrc.hgmp.embreo.filemgr.EmbreoFileNode
 
isDirectory() - Method in class uk.ac.mrc.hgmp.embreo.filemgr.FileNode
 
isDirectory(String) - Method in class uk.ac.mrc.hgmp.embreo.filemgr.EmbreoFileList
Gets whether this name is a directory
isExplored() - Method in class uk.ac.mrc.hgmp.embreo.filemgr.EmbreoFileNode
 
isExplored() - Method in class uk.ac.mrc.hgmp.embreo.filemgr.FileNode
 
isFileSelection() - Method in class uk.ac.mrc.hgmp.embreo.filemgr.EmbreoFileTree
 
isFileSelection() - Method in class uk.ac.mrc.hgmp.embreo.filemgr.EmbreoLocalTree
 
isHiddenFile(File) - Method in class uk.ac.mrc.hgmp.embreo.filemgr.WindowsAltFileSystemView
Returns whether a file is hidden or not.
isLeaf() - Method in class uk.ac.mrc.hgmp.embreo.filemgr.EmbreoFileNode
 
isLeaf() - Method in class uk.ac.mrc.hgmp.embreo.filemgr.FileNode
 
isRoot(File) - Method in class uk.ac.mrc.hgmp.embreo.filemgr.WindowsAltFileSystemView
Returns true if the given file is a root.
isRunning() - Method in class uk.ac.mrc.hgmp.embreo.EmbreoResult
 

J

jobStatus() - Method in class uk.ac.mrc.hgmp.embreo.EmbreoPendingResults
 

K

keys() - Method in class uk.ac.mrc.hgmp.embreo.EmbreoAppList
Gives the returned keys of the embreo request
keys() - Method in class uk.ac.mrc.hgmp.embreo.EmbreoGroupList
The keys of the embreo response hash
keys() - Method in class uk.ac.mrc.hgmp.embreo.EmbreoResList
 
keys() - Method in class uk.ac.mrc.hgmp.embreo.EmbreoRun
 
keys() - Method in class uk.ac.mrc.hgmp.embreo.filemgr.EmbreoFileRequest
The keys of the returned results hash

L

ListSystemProperties() - Static method in class uk.ac.mrc.hgmp.embreo.EmbreoUtils
Retrieve all the system properties into a String
LocalFileBrowser(EmbreoParams) - Static method in class uk.ac.mrc.hgmp.embreo.filemgr.EmbreoFile
Start a local file browser
LOCALFILENODE_FLAVOR - Static variable in class uk.ac.mrc.hgmp.embreo.filemgr.FileNode
 

M

modeVector() - Method in class uk.ac.mrc.hgmp.embreo.EmbreoParams
Return the mode list as a vector, suitable for loading into a combobox.

N

numCompleted() - Method in class uk.ac.mrc.hgmp.embreo.EmbreoPendingResults
 
numRunning() - Method in class uk.ac.mrc.hgmp.embreo.EmbreoPendingResults
 

P

parse(String, Hashtable) - Static method in class uk.ac.mrc.hgmp.embreo.EmbreoListFile
Parse a list file, reading it in line by line, loading other list files recursively if necessary, and loading any files referred to into the filesToMove hash
PROTOCOL_CORBA - Static variable in class uk.ac.mrc.hgmp.embreo.EmbreoParams
For requests using CORBA
PROTOCOL_JINI - Static variable in class uk.ac.mrc.hgmp.embreo.EmbreoParams
For requests using Jini
PROTOCOL_JXTA - Static variable in class uk.ac.mrc.hgmp.embreo.EmbreoParams
For requests using Jxta
PROTOCOL_RMI - Static variable in class uk.ac.mrc.hgmp.embreo.EmbreoParams
For requests using Java RMI
PROTOCOL_RMI_IIOP - Static variable in class uk.ac.mrc.hgmp.embreo.EmbreoParams
For requests using RMI over IIOP
PROTOCOL_SOAP - Static variable in class uk.ac.mrc.hgmp.embreo.EmbreoParams
For SOAP requests via http
proxyDescription() - Method in class uk.ac.mrc.hgmp.embreo.EmbreoParams
A description of the proxy settings

R

RemoteFileBrowser(EmbreoParams) - Static method in class uk.ac.mrc.hgmp.embreo.filemgr.EmbreoFile
Start a remote file browser
removeResult(EmbreoResult) - Method in class uk.ac.mrc.hgmp.embreo.EmbreoPendingResults
 
resetCount() - Method in class uk.ac.mrc.hgmp.embreo.EmbreoPendingResults
 

S

SERVER_DOWN - Static variable in class uk.ac.mrc.hgmp.embreo.EmbreoParams
Denotes a server is not responding
SERVER_ERR - Static variable in class uk.ac.mrc.hgmp.embreo.EmbreoParams
Denotes a server is giving errors
SERVER_OK - Static variable in class uk.ac.mrc.hgmp.embreo.EmbreoParams
Denotes a server is OK
serverDescription() - Method in class uk.ac.mrc.hgmp.embreo.EmbreoParams
A description of the server settings
serverName() - Method in class uk.ac.mrc.hgmp.embreo.filemgr.EmbreoFileNode
 
serverName() - Method in class uk.ac.mrc.hgmp.embreo.filemgr.FileNode
 
setCurrent(String) - Method in class uk.ac.mrc.hgmp.embreo.EmbreoPendingResults
Save the name of a dataset, marking it as the current dataset
setCurrent(String) - Method in class uk.ac.mrc.hgmp.embreo.EmbreoResList
Save the name of a dataset, marking it as the current dataset
setCurrentDir(String) - Method in class uk.ac.mrc.hgmp.embreo.filemgr.EmbreoFileRoots
Set the current directory
setCurrentDir(String) - Method in class uk.ac.mrc.hgmp.embreo.filemgr.EmbreoLocalRoots
Set the current directory
setCurrentMode(String) - Method in class uk.ac.mrc.hgmp.embreo.EmbreoParams
Set the current mode.
setCurrentRoot(String) - Method in class uk.ac.mrc.hgmp.embreo.filemgr.EmbreoFileRoots
Set the current root
setCurrentRoot(String) - Method in class uk.ac.mrc.hgmp.embreo.filemgr.EmbreoLocalRoots
Set the current root
setDescription(String) - Method in class uk.ac.mrc.hgmp.embreo.EmbreoResult
 
setPrivateSoapService(String) - Method in class uk.ac.mrc.hgmp.embreo.EmbreoParams
Set the name of the private soap service we're using
setPrivateSoapURL(String) - Method in class uk.ac.mrc.hgmp.embreo.EmbreoParams
Set the URL of the private soap server
setPublicSoapService(String) - Method in class uk.ac.mrc.hgmp.embreo.EmbreoParams
Set the name of the public soap service we're using
setPublicSoapURL(String) - Method in class uk.ac.mrc.hgmp.embreo.EmbreoParams
Set the URL of the public soap server
setResults(Hashtable) - Method in class uk.ac.mrc.hgmp.embreo.EmbreoResult
 
setServerStatus(String, int) - Method in class uk.ac.mrc.hgmp.embreo.EmbreoParams
Mark a server as bad
setServicePasswd(String) - Method in class uk.ac.mrc.hgmp.embreo.EmbreoParams
Save the password needed for the remote service
setServiceUserName(String) - Method in class uk.ac.mrc.hgmp.embreo.EmbreoParams
Save the username needed for the remote service
setupServerRedundancy() - Method in class uk.ac.mrc.hgmp.embreo.EmbreoParams
Initialize the server redundancy data.
setX11display(String) - Method in class uk.ac.mrc.hgmp.embreo.EmbreoParams
Remember the X display name
showFile(EmbreoParams, EmbreoFileRoots, String) - Method in class uk.ac.mrc.hgmp.embreo.filemgr.EmbreoFileTree
Retrieve a file and show it in a new dindow.
showLocalFile(EmbreoParams, EmbreoLocalRoots, String) - Method in class uk.ac.mrc.hgmp.embreo.filemgr.EmbreoLocalTree
Retrieve a file and show it in a new window.
showPendingResults(JFrame) - Method in class uk.ac.mrc.hgmp.embreo.EmbreoPendingResults
 
startupFailed() - Method in class uk.ac.mrc.hgmp.embreo.EmbreoStartup
Called if something went wrong in startup.
statusHash() - Method in class uk.ac.mrc.hgmp.embreo.EmbreoPendingResults
 
statusPanel(JFrame) - Method in class uk.ac.mrc.hgmp.embreo.EmbreoPendingResults
A panel with appropriate gadgets to show the status of any jobs and to view them, and to set the mode.
stringcontents() - Method in class uk.ac.mrc.hgmp.embreo.filemgr.EmbreoLocalGet
The contents, as a String
succeeded() - Method in class uk.ac.mrc.hgmp.embreo.EmbreoAppList
Whether the underlying soap call worked
succeeded() - Method in class uk.ac.mrc.hgmp.embreo.EmbreoPrivateRequest
Whether the call succeeded (eventually) or not
succeeded() - Method in class uk.ac.mrc.hgmp.embreo.EmbreoPublicRequest
Whether the call succeeded (eventually) or not

T

thisNodeTitle(Object) - Method in class uk.ac.mrc.hgmp.embreo.EmbreoTreeCellRenderer
Gets the title of the node.
toString() - Method in class uk.ac.mrc.hgmp.embreo.filemgr.EmbreoFileNode
 
toString() - Method in class uk.ac.mrc.hgmp.embreo.filemgr.FileNode
 

U

updateEmbreoProperty(String, String) - Method in class uk.ac.mrc.hgmp.embreo.EmbreoParams
Update the properties structure This doesn't update the actual properties, just the Properties object so you must call updateSettingsFromProperties yoursefl
updateEmbreoPropHash(Hashtable) - Method in class uk.ac.mrc.hgmp.embreo.EmbreoParams
Update properties from a Hashtable
updateEmbreoPropString(String) - Method in class uk.ac.mrc.hgmp.embreo.EmbreoParams
Parse a key=value string to update the properties structure
updateEmbreoPropStrings(String[]) - Method in class uk.ac.mrc.hgmp.embreo.EmbreoParams
Parse an array of key=value strings to update the properties structure
updateJobStats() - Method in class uk.ac.mrc.hgmp.embreo.EmbreoPendingResults
 
updateMode() - Method in class uk.ac.mrc.hgmp.embreo.EmbreoPendingResults
Updates the mode on the combo box to reflect the current state
updateMode(String) - Method in class uk.ac.mrc.hgmp.embreo.EmbreoPendingResults
Updates the mode on the combo box to reflect the requested value
updateRes(Hashtable) - Method in class uk.ac.mrc.hgmp.embreo.EmbreoResList
Replace the current results hash
updateSettingsFromProperties() - Method in class uk.ac.mrc.hgmp.embreo.EmbreoParams
 
updateStatus() - Method in class uk.ac.mrc.hgmp.embreo.EmbreoPendingResults
Connect to the embreo server, and update the status of the jobs in the list.

W

warningPopup(JFrame, String) - Static method in class uk.ac.mrc.hgmp.embreo.EmbreoUtils
shortcut to create a warning popup
WindowsAltFileSystemView - class uk.ac.mrc.hgmp.embreo.filemgr.WindowsAltFileSystemView.
This class is necessary due to an annoying bug on Windows NT where instantiating a JFileChooser with the default FileSystemView will cause a "drive A: not ready" error every time.
WindowsAltFileSystemView() - Constructor for class uk.ac.mrc.hgmp.embreo.filemgr.WindowsAltFileSystemView
 
writeMsg() - Method in class uk.ac.mrc.hgmp.embreo.filemgr.EmbreoFileSave
A message to describe the save operation
writeOK() - Method in class uk.ac.mrc.hgmp.embreo.filemgr.EmbreoFileSave
Whether the operation was successful

A B C D E F G H I J K L M N P R S T U W