EMBOSS: cutgextract


Program cutgextract

Function

Extract data from CUTG

Description

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Usage

Here is a sample session with cutgextract:

% cutgextract

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Command line arguments

   Mandatory qualifiers:
  [-directory]         dirlist    CUTG directory

   Optional qualifiers: (none)
   Advanced qualifiers:
   -wildspec           string     Type of codon file

   General qualifiers:
  -help                bool       report command line options. More
                                  information on associated and general
                                  qualifiers can be found with -help -verbose


EMBOSS An error in ajacd.c at line 10717: unknown attribute 'name' for 'directory'

Input file format

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Output file format

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Data files

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Notes

None.

References

None.

Warnings

None.

Diagnostic Error Messages

None.

Exit status

It always exits with status 0.

Known bugs

None.

See also

Program nameDescription
domainerBuild domain coordinate files
nrscopeConverts redundant EMBL-format SCOP file to non-redundant one
printsextractExtract data from PRINTS
prosextractBuilds the PROSITE motif database for patmatmotifs to search
rebaseextractExtract data from REBASE
scopeConvert raw scop classification file to embl-like format
tfextractExtract data from TRANSFAC

Author(s)

This application was written by Alan Bleasby (ableasby@hgmp.mrc.ac.uk) **************** EDIT HERE ****************

History

Written (date) - author. **************** EDIT HERE ****************

Target users

This program is intended to be used by everyone and everything, from naive users to embedded scripts.

Comments