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Contents
The
EMBOSS
Administrators Guide
David Martin
EMBnet Norway
This guide relates to
EMBOSS
1.3.0
Contents
Introduction
About this document
Credits
Reproduction
What is
EMBOSS
?
Where do I get it?
Installation
Retrieving
EMBOSS
by anonymous ftp
Interactive FTP
FTP using
WGET
Unpacking
Compilation
Configure
Installation directory
Configuring
EMBOSS
graphics
Building
EMBOSS
Post compilation setup
Testing your
EMBOSS
installation
Installing EMBASSY
Installing
EMBOSS
in package format
Installing
EMBOSS
on FreeBSD
Configuration
EMBOSS
environment variables
Configuring
EMBOSS
differently for different groups of users
Databases
Database access modes
General database configuration.
Database access methods
Indexing and configuring flatfile databases
Fine tuning the installation:
Indexing and configuring GCG format databases
Indexing and configuring BLAST databases
Indexing and configuring FASTA databases
Configuring
EMBOSS
to use SRS for database lookup.
Indexing and configuring other databases
Other data
REBASE
TRANSFAC
PROSITE
PRINTS
Miscellaneous data files
Default program settings
Logging
Resources
Programs
Databases
Other Documentation
Maintainance of your
EMBOSS
installation
Automated installation of
EMBOSS
and EMBASSY
Automated database updating
Automated update of REBASE
Acknowledgements
About this document ...
EMBnet Manager
8/17/2000
