org.biojava.bio.seq.io.agave
Class AGAVESeqFeatureHandler
java.lang.Object
org.biojava.bio.seq.io.agave.StAXContentHandlerBase
org.biojava.bio.seq.io.agave.StAXFeatureHandler
org.biojava.bio.seq.io.agave.AGAVESeqFeatureHandler
- All Implemented Interfaces:
- AGAVEFeatureCallbackItf, StAXContentHandler
public class AGAVESeqFeatureHandler
- extends StAXFeatureHandler
- implements AGAVEFeatureCallbackItf
seq_feature
- Author:
- Hanning Ni Doubletwist Inc
Methods inherited from class org.biojava.bio.seq.io.agave.StAXFeatureHandler |
addFeatureToSequence, addHandler, createTemplate, endElement, endElementHandler, getFeatureListener, getHandlerStackIterator, getLevel, pop, push, realizeSubFeatures, setFeatureListener, setHandlerCharacteristics, setProperty, startElement |
Methods inherited from class java.lang.Object |
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait |
AGAVE_SEQ_FEATURE_HANDLER_FACTORY
public static final StAXHandlerFactory AGAVE_SEQ_FEATURE_HANDLER_FACTORY
startElementHandler
public void startElementHandler(String nsURI,
String localName,
String qName,
Attributes attrs)
throws SAXException
- Description copied from class:
StAXFeatureHandler
- Element-specific handler.
Subclass this to do something useful!
- Overrides:
startElementHandler
in class StAXFeatureHandler
- Throws:
SAXException
addProperty
public void addProperty(AGAVEProperty prop)
reportFeature
public void reportFeature(Location loc)
- Specified by:
reportFeature
in interface AGAVEFeatureCallbackItf
reportStrand
public void reportStrand(StrandedFeature.Strand strand)
- Specified by:
reportStrand
in interface AGAVEFeatureCallbackItf
addRelatedAnnot
public void addRelatedAnnot(AGAVERelatedAnnot prop)