ssbind
Class SubHitBuilder
java.lang.Object
org.biojava.bio.search.SearchContentFilter
ssbind.SubHitBuilder
- All Implemented Interfaces:
- org.biojava.bio.search.SearchContentHandler
public class SubHitBuilder
- extends org.biojava.bio.search.SearchContentFilter
Build SeqSimilaritySearchSubHit instances from the sub hit info.
Note: You must have an AlignmentBuilder in the chain before
this handler
This will consume all the information necessary to build a
SeqSimilaritySearchSubHit instance and then emit one under the key
SubHitBuilder.SEARCH_SUB_HIT to the next handler in the chain.
- Author:
- Matthew Pocock
Constructor Summary |
SubHitBuilder(org.biojava.bio.search.SearchContentHandler delegate)
|
Methods inherited from class org.biojava.bio.search.SearchContentFilter |
addHitProperty, addSearchProperty, endHeader, endHit, endSearch, getMoreSearches, setDatabaseID, setMoreSearches, setQueryID, startHeader, startHit, startSearch |
Methods inherited from class java.lang.Object |
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait |
SEARCH_SUB_HIT
public static final Object SEARCH_SUB_HIT
SubHitBuilder
public SubHitBuilder(org.biojava.bio.search.SearchContentHandler delegate)
startSubHit
public void startSubHit()
- Specified by:
startSubHit
in interface org.biojava.bio.search.SearchContentHandler
- Overrides:
startSubHit
in class org.biojava.bio.search.SearchContentFilter
addSubHitProperty
public void addSubHitProperty(Object key,
Object val)
- Specified by:
addSubHitProperty
in interface org.biojava.bio.search.SearchContentHandler
- Overrides:
addSubHitProperty
in class org.biojava.bio.search.SearchContentFilter
endSubHit
public void endSubHit()
- Specified by:
endSubHit
in interface org.biojava.bio.search.SearchContentHandler
- Overrides:
endSubHit
in class org.biojava.bio.search.SearchContentFilter