Uses of Package
org.biojava.bio.structure

Packages that use org.biojava.bio.structure
org.biojava.bio.program.das.dasstructure request a protein structure via DAS 
org.biojava.bio.structure Interfaces and classes for protein structure (PDB). 
org.biojava.bio.structure.align Classes for the super-imposition of structures. 
org.biojava.bio.structure.align.helper Helper classes for structural alignment. 
org.biojava.bio.structure.align.pairwise Classes for the pairwise alignment of structures. 
org.biojava.bio.structure.gui A few convenience classes to view protein structures with Jmol (if it is on the classpath), to calculate a protein structure alignment and to investigate the internals of the protein structure alignment algorithm. 
org.biojava.bio.structure.gui.events Some event classes for the protein structure GUIs. 
org.biojava.bio.structure.gui.util Some utility classes for the protein structure GUIs. 
org.biojava.bio.structure.io Input and Output of Structures 
org.biojava.bio.structure.io.mmcif Input and Output of mmcif files 
org.biojava.bio.structure.server classes for easier management of PDB installations 
 

Classes in org.biojava.bio.structure used by org.biojava.bio.program.das.dasstructure
Structure
          Interface for a structure object.
 

Classes in org.biojava.bio.structure used by org.biojava.bio.structure
AminoAcid
           A Group that represents an AminoAcid.
Atom
          A simple interface for an Atom.
Author
          Describes author attributes for author information in a PDB file.
Chain
           Defines the interface for a Chain.
Compound
          Created by IntelliJ IDEA.
DBRef
          A class to represent database cross references.
Group
          This is the data structure for a single Group of atoms.
HetatomImpl
          Generic Implementation of a Group interface.
JournalArticle
          PDB-specific
PDBHeader
          A class that contains PDB Header information.
PDBRecord
          An interface implemented by all classes that represent PDB records
SSBond
          A simple bean to store disulfid bridge information, the SSBOND records in the PDB files.
Structure
          Interface for a structure object.
StructureException
          An exception during the parsing of a PDB file.
 

Classes in org.biojava.bio.structure used by org.biojava.bio.structure.align
Atom
          A simple interface for an Atom.
Structure
          Interface for a structure object.
StructureException
          An exception during the parsing of a PDB file.
 

Classes in org.biojava.bio.structure used by org.biojava.bio.structure.align.helper
Atom
          A simple interface for an Atom.
 

Classes in org.biojava.bio.structure used by org.biojava.bio.structure.align.pairwise
Atom
          A simple interface for an Atom.
Structure
          Interface for a structure object.
StructureException
          An exception during the parsing of a PDB file.
 

Classes in org.biojava.bio.structure used by org.biojava.bio.structure.gui
Structure
          Interface for a structure object.
 

Classes in org.biojava.bio.structure used by org.biojava.bio.structure.gui.events
Structure
          Interface for a structure object.
 

Classes in org.biojava.bio.structure used by org.biojava.bio.structure.gui.util
Chain
           Defines the interface for a Chain.
Structure
          Interface for a structure object.
StructureException
          An exception during the parsing of a PDB file.
 

Classes in org.biojava.bio.structure used by org.biojava.bio.structure.io
Chain
           Defines the interface for a Chain.
Group
          This is the data structure for a single Group of atoms.
Structure
          Interface for a structure object.
StructureException
          An exception during the parsing of a PDB file.
 

Classes in org.biojava.bio.structure used by org.biojava.bio.structure.io.mmcif
Structure
          Interface for a structure object.
 

Classes in org.biojava.bio.structure used by org.biojava.bio.structure.server
PDBHeader
          A class that contains PDB Header information.
Structure
          Interface for a structure object.