eventbasedparsing
Class Pdb2XML
java.lang.Object
eventbasedparsing.Pdb2XML
public class Pdb2XML
- extends Object
Pdb2XML is an application for the conversion native output from
BLAST-like bioinformatics software into an XML format. For
currently supported bioinformatics programs, please see the
documentation for the BlastLikeSaxParser.
The XML produced should validate against the biojava
MacromolecularStructureCollection DTD.
Usage is:
java Pdb2XML <pdb file pathname>
-mode is optional paramater.
Copyright © 2000 Cambridge Antibody Technology.
Primary author -
Other authors -
- Tim Dilks (CAT)
- Colin Hardman (CAT)
- Stuart Johnston (CAT)
- Version:
- 1.1
- Author:
- Cambridge Antibody Technology Group plc (CAT)
Method Summary |
static void |
main(String[] args)
Converts an file containing the output from bioinformatics software
with a "pdb like" format into an XML format. |
Methods inherited from class java.lang.Object |
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait |
Pdb2XML
public Pdb2XML()
main
public static void main(String[] args)
throws Exception
- Converts an file containing the output from bioinformatics software
with a "pdb like" format into an XML format.
- Parameters:
args
- a String[]
representation of a pathname
- Throws:
Exception
- if an error occurs