Uses of Interface
org.biojava.bio.symbol.SoftMaskedAlphabet.MaskingDetector

Packages that use SoftMaskedAlphabet.MaskingDetector
org.biojava.bio.symbol Representation of the Symbols that make up a sequence, and locations within them. 
 

Uses of SoftMaskedAlphabet.MaskingDetector in org.biojava.bio.symbol
 

Classes in org.biojava.bio.symbol that implement SoftMaskedAlphabet.MaskingDetector
static class SoftMaskedAlphabet.MaskingDetector.DefaultMaskingDetector
           
 

Fields in org.biojava.bio.symbol declared as SoftMaskedAlphabet.MaskingDetector
static SoftMaskedAlphabet.MaskingDetector SoftMaskedAlphabet.MaskingDetector.DEFAULT
           
 

Methods in org.biojava.bio.symbol that return SoftMaskedAlphabet.MaskingDetector
 SoftMaskedAlphabet.MaskingDetector SoftMaskedAlphabet.getMaskingDetector()
          Getter for the MaskingDetector
 

Methods in org.biojava.bio.symbol with parameters of type SoftMaskedAlphabet.MaskingDetector
static SoftMaskedAlphabet SoftMaskedAlphabet.getInstance(FiniteAlphabet alphaToMask, SoftMaskedAlphabet.MaskingDetector maskingDetector)
          Creates a compound alphabet that is a hybrid of the alphabet that is to be soft masked and a binary alphabet that indicates if any Symbol is soft masked or not.