org.biojavax.bio.seq.io
Class SimpleRichSequenceBuilderFactory

java.lang.Object
  extended by org.biojavax.bio.seq.io.SimpleRichSequenceBuilderFactory
All Implemented Interfaces:
SequenceBuilderFactory, RichSequenceBuilderFactory

public class SimpleRichSequenceBuilderFactory
extends Object
implements RichSequenceBuilderFactory

Generates RichSequenceBuilder objects.

Since:
1.5
Author:
Mark Schreiber, Richard Holland
See Also:
RichSequenceBuilder

Field Summary
 
Fields inherited from interface org.biojavax.bio.seq.io.RichSequenceBuilderFactory
FACTORY, PACKED, THRESHOLD, THRESHOLD_VALUE
 
Constructor Summary
SimpleRichSequenceBuilderFactory()
          Creates a new instance of SimpleRichSequenceBuilderFactory
SimpleRichSequenceBuilderFactory(SymbolListFactory fact)
          Creates a new instance of SimpleRichSequenceBuilderFactory
SimpleRichSequenceBuilderFactory(SymbolListFactory fact, int threshold)
          Creates a new instance of SimpleRichSequenceBuilderFactory that uses a specified factory for SymbolLists longer than a specified length.
 
Method Summary
 SequenceBuilder makeSequenceBuilder()
          
 
Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
 

Constructor Detail

SimpleRichSequenceBuilderFactory

public SimpleRichSequenceBuilderFactory()
Creates a new instance of SimpleRichSequenceBuilderFactory


SimpleRichSequenceBuilderFactory

public SimpleRichSequenceBuilderFactory(SymbolListFactory fact)
Creates a new instance of SimpleRichSequenceBuilderFactory

Parameters:
fact - the factory to use when building the SymbolList.

SimpleRichSequenceBuilderFactory

public SimpleRichSequenceBuilderFactory(SymbolListFactory fact,
                                        int threshold)
Creates a new instance of SimpleRichSequenceBuilderFactory that uses a specified factory for SymbolLists longer than a specified length. Before that a SimpleSymbolListFacotry is used.

Parameters:
fact - the factory to use when building the SymbolList.
threshold - the threshold to exceed before using this factory
Method Detail

makeSequenceBuilder

public SequenceBuilder makeSequenceBuilder()

Specified by:
makeSequenceBuilder in interface SequenceBuilderFactory