Uses of Package
org.biojava.bio.structure.align.pairwise

Packages that use org.biojava.bio.structure.align.pairwise
org.biojava.bio.structure.align Classes for the super-imposition of structures. 
org.biojava.bio.structure.align.pairwise Classes for the pairwise alignment of structures. 
org.biojava.bio.structure.gui A few convenience classes to view protein structures with Jmol (if it is on the classpath), to calculate a protein structure alignment and to investigate the internals of the protein structure alignment algorithm. 
org.biojava.bio.structure.gui.util Some utility classes for the protein structure GUIs. 
 

Classes in org.biojava.bio.structure.align.pairwise used by org.biojava.bio.structure.align
AlternativeAlignment
          Implements a class which handles one possible (alternative) solution.
FragmentPair
          a pair of fragments of two protein structures
 

Classes in org.biojava.bio.structure.align.pairwise used by org.biojava.bio.structure.align.pairwise
Alignable
           
AlternativeAlignment
          Implements a class which handles one possible (alternative) solution.
FragmentPair
          a pair of fragments of two protein structures
 

Classes in org.biojava.bio.structure.align.pairwise used by org.biojava.bio.structure.gui
AlternativeAlignment
          Implements a class which handles one possible (alternative) solution.
FragmentPair
          a pair of fragments of two protein structures
 

Classes in org.biojava.bio.structure.align.pairwise used by org.biojava.bio.structure.gui.util
AlternativeAlignment
          Implements a class which handles one possible (alternative) solution.