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Packages that use SymbolListFactory | |
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org.biojava.bio.seq.io | Classes and interfaces for processing and producing flat-file representations of sequences. |
org.biojava.bio.symbol | Representation of the Symbols that make up a sequence, and locations within them. |
org.biojavax.bio.seq.io | Classes to support the I/O of RichSequence and Bioentry objects. |
Uses of SymbolListFactory in org.biojava.bio.seq.io |
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Constructors in org.biojava.bio.seq.io with parameters of type SymbolListFactory | |
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ChunkedSymbolListFactory(SymbolListFactory symListFactory)
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ChunkedSymbolListFactory(SymbolListFactory userSymListFactory,
int threshold)
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Uses of SymbolListFactory in org.biojava.bio.symbol |
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Classes in org.biojava.bio.symbol that implement SymbolListFactory | |
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class |
PackedSymbolListFactory
This class makes PackedSymbolLists. |
class |
SimpleSymbolListFactory
This class makes SimpleSymbolLists. |
Uses of SymbolListFactory in org.biojavax.bio.seq.io |
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Constructors in org.biojavax.bio.seq.io with parameters of type SymbolListFactory | |
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SimpleRichSequenceBuilder(SymbolListFactory factory)
Creates a new instance of SimpleRichSequenceBuilder with the desired symbollistfactory and threshold of zero. |
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SimpleRichSequenceBuilder(SymbolListFactory factory,
int threshold)
Creates a new instance of SimpleRichSequenceBuilder with the desired symbollistfactory and threshold. |
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SimpleRichSequenceBuilderFactory(SymbolListFactory fact)
Creates a new instance of SimpleRichSequenceBuilderFactory |
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SimpleRichSequenceBuilderFactory(SymbolListFactory fact,
int threshold)
Creates a new instance of SimpleRichSequenceBuilderFactory that uses a specified factory for SymbolLists longer than a specified
length. |
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