org.biojava.bio.structure.gui.util
Class SequenceScalePanel
java.lang.Object
java.awt.Component
java.awt.Container
javax.swing.JComponent
javax.swing.JPanel
org.biojava.bio.structure.gui.util.SequenceScalePanel
- All Implemented Interfaces:
- ImageObserver, MenuContainer, Serializable, Accessible
public class SequenceScalePanel
- extends JPanel
A class that draws a Sequence as a rectangle, a scale display over it.
- Since:
- 1.7
- Author:
- Andreas Prlic
- See Also:
- Serialized Form
Methods inherited from class javax.swing.JComponent |
addAncestorListener, addNotify, addVetoableChangeListener, computeVisibleRect, contains, createToolTip, disable, enable, firePropertyChange, firePropertyChange, firePropertyChange, fireVetoableChange, getActionForKeyStroke, getActionMap, getAlignmentX, getAlignmentY, getAncestorListeners, getAutoscrolls, getBorder, getBounds, getClientProperty, getComponentGraphics, getComponentPopupMenu, getConditionForKeyStroke, getDebugGraphicsOptions, getDefaultLocale, getFontMetrics, getGraphics, getHeight, getInheritsPopupMenu, getInputMap, getInputMap, getInputVerifier, getInsets, getInsets, getListeners, getLocation, getMaximumSize, getMinimumSize, getNextFocusableComponent, getPopupLocation, getPreferredSize, getRegisteredKeyStrokes, getRootPane, getSize, getToolTipLocation, getToolTipText, getToolTipText, getTopLevelAncestor, getTransferHandler, getVerifyInputWhenFocusTarget, getVetoableChangeListeners, getVisibleRect, getWidth, getX, getY, grabFocus, isDoubleBuffered, isLightweightComponent, isManagingFocus, isOpaque, isOptimizedDrawingEnabled, isPaintingTile, isRequestFocusEnabled, isValidateRoot, paint, paintBorder, paintChildren, paintImmediately, paintImmediately, print, printAll, printBorder, printChildren, printComponent, processComponentKeyEvent, processKeyBinding, processKeyEvent, processMouseEvent, processMouseMotionEvent, putClientProperty, registerKeyboardAction, registerKeyboardAction, removeAncestorListener, removeNotify, removeVetoableChangeListener, repaint, repaint, requestDefaultFocus, requestFocus, requestFocus, requestFocusInWindow, requestFocusInWindow, resetKeyboardActions, reshape, revalidate, scrollRectToVisible, setActionMap, setAlignmentX, setAlignmentY, setAutoscrolls, setBackground, setBorder, setComponentPopupMenu, setDebugGraphicsOptions, setDefaultLocale, setDoubleBuffered, setEnabled, setFocusTraversalKeys, setFont, setForeground, setInheritsPopupMenu, setInputMap, setInputVerifier, setMaximumSize, setMinimumSize, setNextFocusableComponent, setOpaque, setPreferredSize, setRequestFocusEnabled, setToolTipText, setTransferHandler, setUI, setVerifyInputWhenFocusTarget, setVisible, unregisterKeyboardAction, update |
Methods inherited from class java.awt.Container |
add, add, add, add, add, addContainerListener, addImpl, addPropertyChangeListener, addPropertyChangeListener, applyComponentOrientation, areFocusTraversalKeysSet, countComponents, deliverEvent, doLayout, findComponentAt, findComponentAt, getComponent, getComponentAt, getComponentAt, getComponentCount, getComponents, getComponentZOrder, getContainerListeners, getFocusTraversalKeys, getFocusTraversalPolicy, getLayout, getMousePosition, insets, invalidate, isAncestorOf, isFocusCycleRoot, isFocusCycleRoot, isFocusTraversalPolicyProvider, isFocusTraversalPolicySet, layout, list, list, locate, minimumSize, paintComponents, preferredSize, printComponents, processContainerEvent, processEvent, remove, remove, removeAll, removeContainerListener, setComponentZOrder, setFocusCycleRoot, setFocusTraversalPolicy, setFocusTraversalPolicyProvider, setLayout, transferFocusBackward, transferFocusDownCycle, validate, validateTree |
Methods inherited from class java.awt.Component |
action, add, addComponentListener, addFocusListener, addHierarchyBoundsListener, addHierarchyListener, addInputMethodListener, addKeyListener, addMouseListener, addMouseMotionListener, addMouseWheelListener, bounds, checkImage, checkImage, coalesceEvents, contains, createImage, createImage, createVolatileImage, createVolatileImage, disableEvents, dispatchEvent, enable, enableEvents, enableInputMethods, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, getBackground, getBounds, getColorModel, getComponentListeners, getComponentOrientation, getCursor, getDropTarget, getFocusCycleRootAncestor, getFocusListeners, getFocusTraversalKeysEnabled, getFont, getForeground, getGraphicsConfiguration, getHierarchyBoundsListeners, getHierarchyListeners, getIgnoreRepaint, getInputContext, getInputMethodListeners, getInputMethodRequests, getKeyListeners, getLocale, getLocation, getLocationOnScreen, getMouseListeners, getMouseMotionListeners, getMousePosition, getMouseWheelListeners, getName, getParent, getPeer, getPropertyChangeListeners, getPropertyChangeListeners, getSize, getToolkit, getTreeLock, gotFocus, handleEvent, hasFocus, hide, imageUpdate, inside, isBackgroundSet, isCursorSet, isDisplayable, isEnabled, isFocusable, isFocusOwner, isFocusTraversable, isFontSet, isForegroundSet, isLightweight, isMaximumSizeSet, isMinimumSizeSet, isPreferredSizeSet, isShowing, isValid, isVisible, keyDown, keyUp, list, list, list, location, lostFocus, mouseDown, mouseDrag, mouseEnter, mouseExit, mouseMove, mouseUp, move, nextFocus, paintAll, postEvent, prepareImage, prepareImage, processComponentEvent, processFocusEvent, processHierarchyBoundsEvent, processHierarchyEvent, processInputMethodEvent, processMouseWheelEvent, remove, removeComponentListener, removeFocusListener, removeHierarchyBoundsListener, removeHierarchyListener, removeInputMethodListener, removeKeyListener, removeMouseListener, removeMouseMotionListener, removeMouseWheelListener, removePropertyChangeListener, removePropertyChangeListener, repaint, repaint, repaint, resize, resize, setBounds, setBounds, setComponentOrientation, setCursor, setDropTarget, setFocusable, setFocusTraversalKeysEnabled, setIgnoreRepaint, setLocale, setLocation, setLocation, setName, setSize, setSize, show, show, size, toString, transferFocus, transferFocusUpCycle |
DEFAULT_X_START
public static final int DEFAULT_X_START
- See Also:
- Constant Field Values
DEFAULT_X_RIGHT_BORDER
public static final int DEFAULT_X_RIGHT_BORDER
- See Also:
- Constant Field Values
DEFAULT_Y_START
public static final int DEFAULT_Y_START
- See Also:
- Constant Field Values
DEFAULT_Y_STEP
public static final int DEFAULT_Y_STEP
- See Also:
- Constant Field Values
DEFAULT_Y_HEIGHT
public static final int DEFAULT_Y_HEIGHT
- See Also:
- Constant Field Values
DEFAULT_Y_BOTTOM
public static final int DEFAULT_Y_BOTTOM
- See Also:
- Constant Field Values
LINE_HEIGHT
public static final int LINE_HEIGHT
- See Also:
- Constant Field Values
MINIMUM_HEIGHT
public static final int MINIMUM_HEIGHT
- See Also:
- Constant Field Values
SEQUENCE_COLOR
public static final Color SEQUENCE_COLOR
SCALE_COLOR
public static final Color SCALE_COLOR
TEXT_SCALE_COLOR
public static final Color TEXT_SCALE_COLOR
IDX_COLOR
public static final Color IDX_COLOR
GAP_COLOR
public static final Color GAP_COLOR
BACKGROUND_COLOR
public static final Color BACKGROUND_COLOR
seqFont
public static final Font seqFont
SIZE
public static final int SIZE
- See Also:
- Constant Field Values
SequenceScalePanel
public SequenceScalePanel(int position)
setAligMap
public void setAligMap(List<AlignedPosition> apos)
setChain
public void setChain(Chain c)
getChain
public Chain getChain()
getScale
public float getScale()
setScale
public void setScale(float scale)
setPaintDefaults
protected void setPaintDefaults(Graphics2D g2D)
- set some default rendering hints, like text antialiasing on
- Parameters:
g2D
- the graphics object to set the defaults on
paintComponent
public void paintComponent(Graphics g)
- Overrides:
paintComponent
in class JComponent
drawScale
protected int drawScale(Graphics2D g2D,
int y)
- draw the Scale
- Parameters:
g2D
- y
- the height on which to draw the scale
- Returns:
- the new y position
drawIdx
protected void drawIdx(Graphics2D g2D,
int y)
drawSequence
protected int drawSequence(Graphics2D g2D,
int y)
- draw the Amino acid sequence
- Parameters:
g2D
- y
- .. height of line to draw the sequence onto
- Returns:
- the new y value