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Packages that use Taxon | |
org.biojava.bio.taxa | Taxonomy object for representing species information. |
Uses of Taxon in org.biojava.bio.taxa |
Classes in org.biojava.bio.taxa that implement Taxon | |
class |
AbstractTaxon
An abstract implementation of Taxon. |
class |
SimpleTaxon
A no-frills implementatation of Taxon. |
class |
WeakTaxon
An implementation of Taxon that keeps only weak references to children, but full references to parents. |
Fields in org.biojava.bio.taxa declared as Taxon | |
protected Taxon |
WeakTaxon.parent
|
protected Taxon |
SimpleTaxon.parent
|
Methods in org.biojava.bio.taxa that return Taxon | |
Taxon |
WeakTaxonFactory.getRoot()
|
Taxon |
WeakTaxonFactory.importTaxon(Taxon taxon)
|
Taxon |
WeakTaxonFactory.createTaxon(java.lang.String scientificName,
java.lang.String commonName)
|
Taxon |
WeakTaxonFactory.addChild(Taxon parent,
Taxon child)
|
Taxon |
WeakTaxonFactory.removeChild(Taxon parent,
Taxon child)
|
Taxon |
WeakTaxonFactory.search(java.lang.Object id)
|
Taxon |
Taxon.getParent()
The parent of this Taxon. |
Taxon |
WeakTaxon.getParent()
|
Taxon |
TaxonParser.parse(TaxonFactory taxonFactory,
java.lang.String taxonString)
Convert a stringified Taxon into a Taxon instance. |
Taxon |
SimpleTaxon.getParent()
|
Taxon |
TaxonFactory.importTaxon(Taxon source)
Import a Taxon and all its children into the implementation provided by this factory. |
Taxon |
TaxonFactory.getRoot()
Retrieve the root upon which all rooted Taxon that this factory knows about are rooted. |
Taxon |
TaxonFactory.search(java.lang.Object id)
Retrieve a Taxon that matches some ID. |
Taxon |
TaxonFactory.createTaxon(java.lang.String scientificName,
java.lang.String commonName)
Create a new orphan Taxon with a given scientific and common name. |
Taxon |
TaxonFactory.addChild(Taxon parent,
Taxon child)
Add a taxon as a child to a parent. |
Taxon |
TaxonFactory.removeChild(Taxon parent,
Taxon child)
Remove a Taxon as a child to this one. |
Taxon |
SimpleTaxonFactory.getRoot()
|
Taxon |
SimpleTaxonFactory.importTaxon(Taxon taxon)
|
Taxon |
SimpleTaxonFactory.createTaxon(java.lang.String scientificName,
java.lang.String commonName)
|
Taxon |
SimpleTaxonFactory.addChild(Taxon parent,
Taxon child)
|
Taxon |
SimpleTaxonFactory.removeChild(Taxon parent,
Taxon child)
|
Taxon |
SimpleTaxonFactory.search(java.lang.Object id)
|
Taxon |
EbiFormat.parse(TaxonFactory taxonFactory,
java.lang.String taxonString)
|
Methods in org.biojava.bio.taxa with parameters of type Taxon | |
Taxon |
WeakTaxonFactory.importTaxon(Taxon taxon)
|
Taxon |
WeakTaxonFactory.addChild(Taxon parent,
Taxon child)
|
Taxon |
WeakTaxonFactory.removeChild(Taxon parent,
Taxon child)
|
java.lang.String |
TaxonParser.serialize(Taxon taxon)
Convert a Taxon into a stringified representation. |
Taxon |
TaxonFactory.importTaxon(Taxon source)
Import a Taxon and all its children into the implementation provided by this factory. |
Taxon |
TaxonFactory.addChild(Taxon parent,
Taxon child)
Add a taxon as a child to a parent. |
Taxon |
TaxonFactory.removeChild(Taxon parent,
Taxon child)
Remove a Taxon as a child to this one. |
Taxon |
SimpleTaxonFactory.importTaxon(Taxon taxon)
|
Taxon |
SimpleTaxonFactory.addChild(Taxon parent,
Taxon child)
|
Taxon |
SimpleTaxonFactory.removeChild(Taxon parent,
Taxon child)
|
java.lang.String |
EbiFormat.serialize(Taxon taxon)
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