org.biojava.bio.seq.io.agave
Class AGAVESeqPropHandler

java.lang.Object
  extended byorg.biojava.bio.seq.io.agave.StAXContentHandlerBase
      extended byorg.biojava.bio.seq.io.agave.StAXPropertyHandler
          extended byorg.biojava.bio.seq.io.agave.AGAVESeqPropHandler
All Implemented Interfaces:
StAXContentHandler

public class AGAVESeqPropHandler
extends StAXPropertyHandler

* Deals with sequence code * * @author Hanning Ni Doubletwist Inc * @author Greg Cox


Field Summary
static StAXHandlerFactory AGAVE_SEQ_PROP_HANDLER_FACTORY
           
 
Fields inherited from class org.biojava.bio.seq.io.agave.StAXPropertyHandler
featureListener, staxenv
 
Method Summary
 void characters(char[] ch, int start, int length)
          Signal a span of character data in the XML input.
 void endElementHandler(java.lang.String nsURI, java.lang.String localName, java.lang.String qName, StAXContentHandler handler)
          Element specific exit handler Subclass to do anything useful.
 
Methods inherited from class org.biojava.bio.seq.io.agave.StAXPropertyHandler
addHandler, endElement, getHandlerStackIterator, setHandlerCharacteristics, setProperty, startElement, startElementHandler
 
Methods inherited from class org.biojava.bio.seq.io.agave.StAXContentHandlerBase
endPrefixMapping, endTree, ignorableWhitespace, processingInstruction, setDocumentLocator, skippedEntity, startPrefixMapping, startTree
 
Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
 

Field Detail

AGAVE_SEQ_PROP_HANDLER_FACTORY

public static final StAXHandlerFactory AGAVE_SEQ_PROP_HANDLER_FACTORY
Method Detail

characters

public void characters(char[] ch,
                       int start,
                       int length)
                throws org.xml.sax.SAXException
Description copied from class: StAXContentHandlerBase
Signal a span of character data in the XML input.

Specified by:
characters in interface StAXContentHandler
Overrides:
characters in class StAXContentHandlerBase
Parameters:
ch - an array of characters
start - index of the first significant character for this event.
length - number of characters significant to this event.
Throws:
org.xml.sax.SAXException

endElementHandler

public void endElementHandler(java.lang.String nsURI,
                              java.lang.String localName,
                              java.lang.String qName,
                              StAXContentHandler handler)
                       throws org.xml.sax.SAXException
Description copied from class: StAXPropertyHandler
Element specific exit handler Subclass to do anything useful.

Overrides:
endElementHandler in class StAXPropertyHandler
Throws:
org.xml.sax.SAXException