Package org.biojava.bio.seq.impl

Standard in-memory implementations of Sequence and Feature.

See:
          Description

Class Summary
AssembledSymbolList Support class for applications which need to patch together sections of sequence into a single SymbolList.
FeatureImpl Wrap up default sets of Feature implementations.
LazyFilterFeatureHolder FeatureHolder which lazily applies a specified filter to another FeatureHolder.
RevCompSequence A reverse complement view onto Sequence interface.
SimpleFeature A no-frills implementation of a feature.
SimpleFramedFeature Title: SimpleFramedFeature.
SimpleHomologyFeature  
SimpleRemoteFeature A no-frills implementation of a remote feature.
SimpleRemoteFeature.DBResolver  
SimpleRestrictionSite SimpleRestrictionSite represents the recognition site of a restriction enzyme.
SimpleSequence A basic implementation of the Sequence interface.
SimpleSequenceFactory A no-frills implementation of SequenceFactory that produces SimpleSequence objects.
SimpleSimilarityPairFeature SimpleSimilarityPairFeature represents a similarity between a query sequence and a subject sequence as produced by a search program.
SimpleStrandedFeature A no-frills implementation of StrandedFeature.
 

Package org.biojava.bio.seq.impl Description

Standard in-memory implementations of Sequence and Feature.