Uses of Interface
org.biojava.bio.gui.sequence.PairwiseRenderContext

Packages that use PairwiseRenderContext
org.biojava.bio.gui.sequence Graphical displays of biological sequences and associated annotations. 
 

Uses of PairwiseRenderContext in org.biojava.bio.gui.sequence
 

Classes in org.biojava.bio.gui.sequence that implement PairwiseRenderContext
 class PairwiseSequencePanel
          A PairwiseSequencePanel is a panel that displays a pair of sequences; one sequence (the primary) may be either left-to-right (HORIZONTAL) or from top-to-bottom (VERTICAL).
 class SubPairwiseRenderContext
          SubPairwiseRenderContext is a rendering context which wraps a delegate context and effectively hides some of the delegate's properties with its own.
 

Methods in org.biojava.bio.gui.sequence that return PairwiseRenderContext
protected  PairwiseRenderContext PairwiseFilteringRenderer.getSubContext(PairwiseRenderContext context)
          getSubContext creates a new context which has FeatureHolders filtered using the current filter.
 

Methods in org.biojava.bio.gui.sequence with parameters of type PairwiseRenderContext
 void PairwiseOverlayRenderer.paint(java.awt.Graphics2D g2, PairwiseRenderContext context)
          paint applies all renderers in the order in which they were added.
 SequenceViewerEvent PairwiseOverlayRenderer.processMouseEvent(PairwiseRenderContext context, java.awt.event.MouseEvent me, java.util.List path)
          processMouseEvent produces a SequenceViewerEvent in response to a mouse gesture.
 void CrosshairRenderer.paint(java.awt.Graphics2D g2, PairwiseRenderContext context)
           
 SequenceViewerEvent CrosshairRenderer.processMouseEvent(PairwiseRenderContext context, java.awt.event.MouseEvent me, java.util.List path)
          processMouseEvent processes any MouseEvents directed to the renderer.
 void PairwiseSequenceRenderer.paint(java.awt.Graphics2D g2, PairwiseRenderContext prc)
          paints some or all of the information about the sequence pair.
 SequenceViewerEvent PairwiseSequenceRenderer.processMouseEvent(PairwiseRenderContext prc, java.awt.event.MouseEvent me, java.util.List path)
          processMouseEvent produces a SequenceViewerEvent in response to a mouse gesture.
 void PairwiseFilteringRenderer.paint(java.awt.Graphics2D g2, PairwiseRenderContext context)
           
 SequenceViewerEvent PairwiseFilteringRenderer.processMouseEvent(PairwiseRenderContext context, java.awt.event.MouseEvent me, java.util.List path)
           
protected  PairwiseRenderContext PairwiseFilteringRenderer.getSubContext(PairwiseRenderContext context)
          getSubContext creates a new context which has FeatureHolders filtered using the current filter.
 void PairwiseDiagonalRenderer.paint(java.awt.Graphics2D g2, PairwiseRenderContext context)
          paint renders the feature as a simple line.
 SequenceViewerEvent PairwiseDiagonalRenderer.processMouseEvent(PairwiseRenderContext context, java.awt.event.MouseEvent me, java.util.List path)
          processMouseEvent acts on a mouse gesture.
 

Constructors in org.biojava.bio.gui.sequence with parameters of type PairwiseRenderContext
SubPairwiseRenderContext(PairwiseRenderContext context, SymbolList symbols, SymbolList secondarySymbols, FeatureHolder features, FeatureHolder secondaryFeatures, RangeLocation range, RangeLocation secondaryRange)
          Creates a new SubPairwiseRenderContext.