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Packages that use TaxonFactory | |
org.biojava.bio.seq.io | Classes and interfaces for processing and producing flat-file representations of sequences. |
org.biojava.bio.taxa | Taxonomy object for representing species information. |
Uses of TaxonFactory in org.biojava.bio.seq.io |
Constructors in org.biojava.bio.seq.io with parameters of type TaxonFactory | |
OrganismParser(SequenceBuilder delegate,
TaxonFactory taxonFactory,
TaxonParser taxonParser,
java.lang.String sciNameKey,
java.lang.String commonNameKey,
java.lang.String ncbiTaxonKey)
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OrganismParser.Factory(SequenceBuilderFactory delegateFactory,
TaxonFactory taxonFactory,
TaxonParser taxonParser,
java.lang.String sciNameKey,
java.lang.String commonNameKey,
java.lang.String ncbiTaxonKey)
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Uses of TaxonFactory in org.biojava.bio.taxa |
Classes in org.biojava.bio.taxa that implement TaxonFactory | |
class |
SimpleTaxonFactory
A no-frills implementation of TaxaFactory that builds an in-memory Taxa tree. |
class |
WeakTaxonFactory
An implementation of TaxonFactory that builds a weak in-memory Taxon tree. |
Methods in org.biojava.bio.taxa with parameters of type TaxonFactory | |
Taxon |
TaxonParser.parse(TaxonFactory taxonFactory,
java.lang.String taxonString)
Convert a stringified Taxon into a Taxon instance. |
Taxon |
EbiFormat.parse(TaxonFactory taxonFactory,
java.lang.String taxonString)
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