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java.lang.Objectorg.biojava.bio.seq.io.agave.StAXContentHandlerBase
org.biojava.bio.seq.io.agave.StAXFeatureHandler
org.biojava.bio.seq.io.agave.AGAVEFragmentOrientationHandler
Field Summary | |
static StAXHandlerFactory |
AGAVE_FRAGMENT_ORIENTATION_HANDLER_FACTORY
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Fields inherited from class org.biojava.bio.seq.io.agave.StAXFeatureHandler |
annot, callbackStack, endLoc, featureListener, featureTemplate, myLocalName, stackLevel, startLoc, staxenv, subFeatures |
Method Summary | |
void |
reportFeature(Location loc)
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void |
reportStrand(StrandedFeature.Strand strand)
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void |
startElementHandler(java.lang.String nsURI,
java.lang.String localName,
java.lang.String qName,
org.xml.sax.Attributes attrs)
Element-specific handler. |
Methods inherited from class org.biojava.bio.seq.io.agave.StAXFeatureHandler |
addFeatureToSequence, addHandler, createTemplate, endElement, endElementHandler, getFeatureListener, getHandlerStackIterator, getLevel, pop, push, realizeSubFeatures, setFeatureListener, setHandlerCharacteristics, setProperty, startElement |
Methods inherited from class org.biojava.bio.seq.io.agave.StAXContentHandlerBase |
characters, endPrefixMapping, endTree, ignorableWhitespace, processingInstruction, setDocumentLocator, skippedEntity, startPrefixMapping, startTree |
Methods inherited from class java.lang.Object |
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait |
Field Detail |
public static final StAXHandlerFactory AGAVE_FRAGMENT_ORIENTATION_HANDLER_FACTORY
Method Detail |
public void reportFeature(Location loc)
reportFeature
in interface AGAVEFeatureCallbackItf
public void reportStrand(StrandedFeature.Strand strand)
reportStrand
in interface AGAVEFeatureCallbackItf
public void startElementHandler(java.lang.String nsURI, java.lang.String localName, java.lang.String qName, org.xml.sax.Attributes attrs) throws org.xml.sax.SAXException
StAXFeatureHandler
startElementHandler
in class StAXFeatureHandler
org.xml.sax.SAXException
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