org.biojava.bio.seq
Class FeatureFilter.ByAnnotationType
java.lang.Object
org.biojava.bio.seq.FeatureFilter.ByAnnotationType
- All Implemented Interfaces:
- FeatureFilter, OptimizableFilter, java.io.Serializable
- Direct Known Subclasses:
- FeatureFilter.AnnotationContains, FeatureFilter.ByAnnotation, FeatureFilter.HasAnnotation
- Enclosing class:
- FeatureFilter
- public static class FeatureFilter.ByAnnotationType
- extends java.lang.Object
- implements OptimizableFilter
A filter that returns all features that have an annotation bundle that is of a given
annotation type.
- Since:
- 1.3
- Author:
- Matthew Pocock, Thomas Down
- See Also:
- Serialized Form
Nested classes inherited from class org.biojava.bio.seq.FeatureFilter |
FeatureFilter.And, FeatureFilter.AnnotationContains, FeatureFilter.ByAncestor, FeatureFilter.ByAnnotation, FeatureFilter.ByAnnotationType, FeatureFilter.ByChild, FeatureFilter.ByClass, FeatureFilter.ByComponentName, FeatureFilter.ByDescendant, FeatureFilter.ByFeature, FeatureFilter.ByPairwiseScore, FeatureFilter.ByParent, FeatureFilter.BySequenceName, FeatureFilter.BySource, FeatureFilter.ByType, FeatureFilter.ContainedByLocation, FeatureFilter.FrameFilter, FeatureFilter.HasAnnotation, FeatureFilter.Not, FeatureFilter.OnlyChildren, FeatureFilter.OnlyDescendants, FeatureFilter.Or, FeatureFilter.OverlapsLocation, FeatureFilter.ShadowContainedByLocation, FeatureFilter.ShadowOverlapsLocation, FeatureFilter.StrandFilter |
Methods inherited from class java.lang.Object |
clone, finalize, getClass, notify, notifyAll, wait, wait, wait |
FeatureFilter.ByAnnotationType
protected FeatureFilter.ByAnnotationType()
FeatureFilter.ByAnnotationType
public FeatureFilter.ByAnnotationType(AnnotationType type)
getType
public AnnotationType getType()
setType
protected void setType(AnnotationType type)
accept
public boolean accept(Feature f)
- Description copied from interface:
FeatureFilter
- This method determines whether a feature is to be accepted.
- Specified by:
accept
in interface FeatureFilter
- Parameters:
f
- the Feature to evaluate
- Returns:
- true if this feature is to be selected in, or false if it is to be ignored
equals
public boolean equals(java.lang.Object o)
hashCode
public int hashCode()
isDisjoint
public boolean isDisjoint(FeatureFilter filter)
- Description copied from interface:
OptimizableFilter
- Returns true if this filter is disjoint from filt - that is, there is no
Feature that is accepted by both filters. The empty filter is disjoint from
all other filters. The all filter is disjoint from none.
- Specified by:
isDisjoint
in interface OptimizableFilter
isProperSubset
public boolean isProperSubset(FeatureFilter filter)
- Description copied from interface:
OptimizableFilter
- Returns true if this filter is a proper subset of sup - that is, for every
feature that matches this, it also matches sup. The empty filter is a
proper subset of all filters. All filters are a proper subset of the all
filter. All filters are proper subsets of themselves.
- Specified by:
isProperSubset
in interface OptimizableFilter
- Parameters:
filter
- the potential super set
- Returns:
- true if sup contains all features contained by this filter
toString
public java.lang.String toString()