Package org.biojava.bio.seq.projection

Code for projecting Feature objects into alternate coordinate systems.

See:
          Description

Interface Summary
Projection Interface implemented by all projected feature objects.
ProjectionContext Context for projected features.
ProjectionEngine.Instantiator Internal helper class.
 

Class Summary
ProjectedFeature Internal class used by ProjectionEngine to wrap Feature objects.
ProjectedStrandedFeature Internal class used by ProjectedFeatureHolder to wrap StrandedFeatures.
ProjectionEngine Factory for proxy objects which project BioJava features into alternate coordinate systems.
ProjectionEngine.InstantiatorImpl Internal helper class.
ProjectionUtils  
 

Package org.biojava.bio.seq.projection Description

Code for projecting Feature objects into alternate coordinate systems.

This package contains the underlying `engine' code for feature projection. To use it, you will need to write an implementation of the ProjectionContext interface to encode the projection logic you want. For simple applications (most linear coordinate transforms) you will normally want to use the simpler ProjectedFeatureHolder, which uses this API internally.