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Packages that use AbstractSymbolList | |
org.biojava.bio.alignment |
Implementation of the Alignment interface. |
org.biojava.bio.seq | Classes and interfaces for defining biological sequences and informatics objects. |
org.biojava.bio.seq.impl | Standard in-memory implementations of Sequence and
Feature . |
org.biojava.bio.symbol | Representation of the Symbols that make up a sequence, and locations within them. |
Uses of AbstractSymbolList in org.biojava.bio.alignment |
Subclasses of AbstractSymbolList in org.biojava.bio.alignment | |
class |
AbstractULAlignment
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class |
AbstractULAlignment.SubULAlignment
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class |
FlexibleAlignment
FlexibleAlignment is a class which implements UnequalLengthAlignment, ARAlignment and EditableAlignment It places no restriction on where any sequence can be in the alignment so there could be gaps in the alignment. |
Uses of AbstractSymbolList in org.biojava.bio.seq |
Subclasses of AbstractSymbolList in org.biojava.bio.seq | |
class |
SimpleGappedSequence
Simple implementation of GappedSequence. |
Uses of AbstractSymbolList in org.biojava.bio.seq.impl |
Subclasses of AbstractSymbolList in org.biojava.bio.seq.impl | |
class |
AssembledSymbolList
Support class for applications which need to patch together sections of sequence into a single SymbolList. |
Uses of AbstractSymbolList in org.biojava.bio.symbol |
Subclasses of AbstractSymbolList in org.biojava.bio.symbol | |
class |
DummySymbolList
Symbol list which just consists of non-informative symbols. |
class |
PackedDnaSymbolList
a class that implements storage of symbols in packed form (2 symbols per byte). |
class |
PackedSymbolList
A SymbolList that stores symbols as bit-patterns in an array of longs. |
class |
SimpleAlignment
A simple implementation of an Alignment. |
class |
SimpleGappedSymbolList
This implementation of GappedSymbolList wraps a SymbolList, allowing you to insert gaps. |
class |
SimpleSymbolList
Basic implementation of SymbolList. |
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