Class | Bio::Hinv |
In: |
lib/bio/io/hinv.rb
|
Parent: | Object |
Accessing the H-invDB web services.
BASE_URI | = | "http://www.jbirc.aist.go.jp/hinv/hws/" |
Bio::Hinv.acc2hit("BC053657") # => "HIT000053961"
# File lib/bio/io/hinv.rb, line 36 36: def self.acc2hit(acc) 37: serv = Acc2hit.new 38: serv.query("acc" => acc) 39: serv.result 40: end
Bio::Hinv.hit2acc("HIT000022181") # => "AK097327"
# File lib/bio/io/hinv.rb, line 43 43: def self.hit2acc(hit) 44: serv = Hit2acc.new 45: serv.query("hit" => hit) 46: serv.result 47: end
Bio::Hinv.hit_cnt # => 187156
# File lib/bio/io/hinv.rb, line 50 50: def self.hit_cnt 51: serv = HitCnt.new 52: serv.query 53: serv.result 54: end
Bio::Hinv.hit_definition("HIT000000001") # => "Rho guanine …"
# File lib/bio/io/hinv.rb, line 57 57: def self.hit_definition(hit) 58: serv = HitDefinition.new 59: serv.query("hit" => hit) 60: serv.result 61: end
Bio::Hinv.hit_pubmedid("HIT000053961") # => [7624364, 11279095, … ]
# File lib/bio/io/hinv.rb, line 64 64: def self.hit_pubmedid(hit) 65: serv = HitPubmedId.new 66: serv.query("hit" => hit) 67: serv.result 68: end
Bio::Hinv.hit_xml("HIT000000001") # => "<?xml version="1.0" …"
# File lib/bio/io/hinv.rb, line 71 71: def self.hit_xml(hit) 72: serv = Bio::Hinv::HitXML.new 73: serv.query("hit" => hit) 74: puts serv.result 75: end
Bio::Hinv.hix2hit("HIX0000004") # => ["HIT000012846", … ]
# File lib/bio/io/hinv.rb, line 78 78: def self.hix2hit(hix) 79: serv = Bio::Hinv::Hix2hit.new 80: serv.query("hix" => hix) 81: serv.result 82: end
Bio::Hinv.hix_cnt # => 36073
# File lib/bio/io/hinv.rb, line 85 85: def self.hix_cnt 86: serv = HixCnt.new 87: serv.query 88: serv.result 89: end
Bio::Hinv.hix_represent("HIX0000001") # => "HIT000022181"
# File lib/bio/io/hinv.rb, line 92 92: def self.hix_represent(hix) 93: serv = HixRepresent.new 94: serv.query("hix" => hix) 95: serv.result 96: end
Bio::Hinv.id_search("HIT00002218*") # => ["HIT000022181", … ]
# File lib/bio/io/hinv.rb, line 99 99: def self.id_search(query) 100: serv = IdSearch.new 101: serv.query("query" => query) 102: serv.result 103: end
Bio::Hinv.keyword_search("HIT00002218*") # => ["HIT000022181", … ]
# File lib/bio/io/hinv.rb, line 106 106: def self.keyword_search(query) 107: serv = KeywordSearch.new 108: serv.query("query" => query) 109: serv.result 110: end