Path: | lib/bio/db/kegg/genes.rb |
Last Update: | Sun Dec 04 02:16:41 +0000 2011 |
Copyright: | Copyright (C) 2001, 2002, 2006, 2010 Toshiaki Katayama <k@bioruby.org> |
License: | The Ruby License |
$Id:$
See www.genome.jp/kegg/genes.html
require 'bio/io/fetch' entry_string = Bio::Fetch.query('genes', 'b0002') entry = Bio::KEGG::GENES.new(entry_string) # ENTRY p entry.entry # => Hash p entry.entry_id # => String p entry.division # => String p entry.organism # => String # NAME p entry.name # => String p entry.names # => Array # DEFINITION p entry.definition # => String p entry.eclinks # => Array # PATHWAY p entry.pathway # => String p entry.pathways # => Hash # POSITION p entry.position # => String p entry.chromosome # => String p entry.gbposition # => String p entry.locations # => Bio::Locations # MOTIF p entry.motifs # => Hash of Array # DBLINKS p entry.dblinks # => Hash of Array # STRUCTURE p entry.structure # => Array # CODON_USAGE p entry.codon_usage # => Hash p entry.cu_list # => Array # AASEQ p entry.aaseq # => Bio::Sequence::AA p entry.aalen # => Fixnum # NTSEQ p entry.ntseq # => Bio::Sequence::NA p entry.naseq # => Bio::Sequence::NA p entry.ntlen # => Fixnum p entry.nalen # => Fixnum