clade_relations |
[RW] |
CladeRelation object. This is used to
express a typed relationship between two clades. For example it could be
used to describe multiple parents of a clade.
|
confidences |
[RW] |
Array of confidence object
|
description |
[RW] |
String. Description of tree.
|
name |
[RW] |
String. Name of tree (name subelement of
phylogeny element).
|
other |
[RW] |
Array of Other objects. Used to save additional
information from other than PhyloXML
namspace.
|
properties |
[RW] |
Array of Property object. Allows for typed and
referenced properties from external resources to be attached.
|
rerootable |
[RW] |
Boolean. Can be used to indicate that the phylogeny is not allowed to be
rooted differently (i.e. because it is associated with root dependent data,
such as gene duplications).
|
rooted |
[RW] |
Boolean. Required element.
|
sequence_relations |
[RW] |
SequenceRelation object. This is used
to express a typed relationship between two sequences. For example it could
be used to describe an orthology.
|
type |
[RW] |
String. Indicate the type of phylogeny
(i.e. ‘gene tree’).
|