Class Bio::Alignment::FactoryTemplate::FileInFileOutWithTree
In: lib/bio/alignment.rb
Parent: FileInFileOut

Template class for alignment application factory. The program needs: input: file (cannot accept stdin), format = fasta format output: file (parser should be specified by DEFAULT_PARSER) Tree (*.dnd) output is also supported.

Methods

reset  

Attributes

output_dnd  [R]  alignment guide tree generated by the program (*.dnd file)

Public Instance methods

[Source]

      # File lib/bio/alignment.rb, line 2485
2485:         def reset
2486:           @output_dnd = nil
2487:           super
2488:         end

[Validate]