Class Bio::DDBJ::XML::TxSearch
In: lib/bio/io/ddbjxml.rb
Parent: XML

TxSearch

Searching taxonomy information.

Examples

  serv = Bio::DDBJ::XML::TxSearch.new
  puts serv.searchSimple('*coli')
  puts serv.searchSimple('*tardigrada*')
  puts serv.getTxId('Escherichia coli')
  puts serv.getTxName('562')

  query = ["Campylobacter coli", "Escherichia coli"].join("\n")
  rank = ["family", "genus"].join("\n")
  puts serv.searchLineage(query, rank, 'Bacteria')

WSDL Methdos

  • searchSimple(tx_Name)
  • searchParam(tx_Name, tx_Clas, tx_Rank, tx_Rmax, tx_Dcls)
  • getTxId(tx_Name)
  • getTxName(tx_Id)
  • searchLineage(query, ranks, superkingdom)

References

Constants

SERVER_URI = BASE_URI + "TxSearch.wsdl"

[Validate]