Class | Bio::RestrictionEnzyme::Range::HorizontalCutRange |
In: |
lib/bio/util/restriction_enzyme/range/horizontal_cut_range.rb
|
Parent: | CutRange |
c_cut_left | [R] | |
c_cut_right | [R] | |
hcuts | [R] | |
max | [R] | |
min | [R] | |
p_cut_left | [R] | |
p_cut_right | [R] |
# File lib/bio/util/restriction_enzyme/range/horizontal_cut_range.rb, line 23 23: def initialize( left, right=left ) 24: raise "left > right" if left > right 25: 26: # The 'range' here is actually off by one on the left 27: # side in relation to a normal CutRange, so using the normal 28: # variables from CutRange would result in bad behavior. 29: # 30: # See below - the first horizontal cut is the primary cut plus one. 31: # 32: # 1 2 3 4 5 6 7 33: # G A|T T A C A 34: # +-----+ 35: # C T A A T|G T 36: # 1 2 3 4 5 6 7 37: # 38: # Primary cut = 2 39: # Complement cut = 5 40: # Horizontal cuts = 3, 4, 5 41: 42: @p_cut_left = nil 43: @p_cut_right = nil 44: @c_cut_left = nil 45: @c_cut_right = nil 46: @min = left # NOTE this used to be 'nil', make sure all tests work 47: @max = right # NOTE this used to be 'nil', make sure all tests work 48: @range = (@min..@max) unless @min == nil or @max == nil # NOTE this used to be 'nil', make sure all tests work 49: 50: 51: @hcuts = (left..right) 52: end