Class Bio::Meme::Mast::Report
In: lib/bio/appl/meme/mast/report.rb
Parent: Object

Description

A class to parse the output from Mast

WARNING: Currently support is only for -hit_list (machine readable) format

         HTML (default) output is not supported

Examples

Methods

each   each_motif   new  

Attributes

motifs  [R] 

Public Class methods

[Source]

    # File lib/bio/appl/meme/mast/report.rb, line 40
40:         def initialize(mast_hitlist)
41:           @motifs = parse_hit_list(mast_hitlist)
42:         end

Public Instance methods

Iterates each motif (Bio::Meme::Motif)

[Source]

    # File lib/bio/appl/meme/mast/report.rb, line 45
45:         def each
46:           @motifs.each do |motif|
47:             yield motif
48:           end
49:         end
each_motif()

Alias for each

[Validate]