Class Bio::Blast::Bl2seq::Report::Iteration
In: lib/bio/appl/bl2seq/report.rb
Parent: Bio::Blast::Default::Report::Iteration

Bio::Blast::Bl2seq::Report::Iteration stores information about a iteration. Normally, it may contain some Bio::Blast::Bl2seq::Report::Hit objects.

Note that its main existance reason is to keep complatibility between Bio::Blast::Default::Report::* classes.

Methods

hits   new  

Public Class methods

Creates a new Iteration object. It is designed to be called only internally from the Bio::Blast::Default::Report class. Users shall not use the method directly.

[Source]

     # File lib/bio/appl/bl2seq/report.rb, line 92
 92:         def initialize(data)
 93:           @f0stat = []
 94:           @f0dbstat = Bio::Blast::Default::Report::AlwaysNil.instance
 95:           @hits = []
 96:           @num = 1
 97:           while r = data[0] and /^\>/ =~ r
 98:             @hits << Hit.new(data)
 99:           end
100:         end

Public Instance methods

Returns the hits of the iteration. It returns an array of Bio::Blast::Bl2seq::Report::Hit objects.

[Source]

     # File lib/bio/appl/bl2seq/report.rb, line 104
104:         def hits; @hits; end

[Validate]