mafft.rb

Path: lib/bio/appl/mafft.rb
Last Update: Sun Dec 04 02:16:41 +0000 2011

bio/appl/mafft.rb - MAFFT wrapper class

Copyright:Copyright (C) 2003 GOTO Naohisa <ngoto@gen-info.osaka-u.ac.jp>
License:The Ruby License
 $Id: mafft.rb,v 1.18 2007/07/16 12:27:29 ngoto Exp $

Bio::MAFFT is a wrapper class to execute MAFFT. MAFFT is a very fast multiple sequence alignment software.

Important Notes

Though Bio::MAFFT class currently supports only MAFFT version 3, you can use MAFFT version 5 because the class is a wrapper class.

References

Required files

tempfile   bio/command   bio/db/fasta   bio/io/flatfile  

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