report.rb

Path: lib/bio/appl/mafft/report.rb
Last Update: Sun Dec 04 02:16:41 +0000 2011

bio/appl/mafft/report.rb - MAFFT report class

Copyright:Copyright (C) 2003, 2007 Naohisa Goto <ng@bioruby.org>
License:The Ruby License
 $Id: report.rb,v 1.13 2007/07/16 12:21:39 ngoto Exp $

MAFFT result parser class. MAFFT is a very fast multiple sequence alignment software.

Since a result of MAFFT is simply a multiple-fasta format, the significance of this class is to keep standard form and interface between Bio::ClustalW::Report.

Bio::Alignment::MultiFastaFormat is a generic data class for fasta-formatted multiple sequence alignment data. Bio::MAFFT::Report inherits Bio::Alignment::MultiFastaFormat.

References

Required files

stringio   bio/db/fasta   bio/io/flatfile   bio/alignment   bio/appl/mafft  

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