Class | Bio::Blast::Report::Hsp |
In: |
lib/bio/appl/blast/report.rb
|
Parent: | Object |
align_len | [RW] | Length of the alignment used |
bit_score | [RW] | Score (in bits) of HSP |
density | [RW] | Score density |
evalue | [RW] | E-value of HSP |
gaps | [RW] | Number of gaps in HSP |
hit_frame | [RW] | Translation frame of subject |
hit_from | [RW] | Start of HSP in subject |
hit_to | [RW] | End of HSP |
hseq | [RW] | Alignment string for subject (with gaps) |
hsp | [R] | |
identity | [RW] | Number of identities in HSP |
midline | [RW] | Formating middle line |
mismatch_count | [RW] | Available only for ’-m 8’ format outputs. |
num | [RW] | HSP number |
pattern_from | [RW] | Start of PHI-BLAST pattern |
pattern_to | [RW] | End of PHI-BLAST pattern |
percent_identity | [RW] | Available only for ’-m 8’ format outputs. |
positive | [RW] | Number of positives in HSP |
qseq | [RW] | Alignment string for the query (with gaps) |
query_frame | [RW] | Translation frame of query |
query_from | [RW] | Start of HSP in query |
query_to | [RW] | End of HSP |
score | [RW] | Sscore of HSP |