Class Bio::DDBJ::XML::Fasta
In: lib/bio/io/ddbjxml.rb
Parent: XML

Fasta

Searching database using the Fasta package.

Examples

  serv = Bio::DDBJ::XML::Fasta.new
  query = ">Test\nMSDGAVQPDG GQPAVRNERA TGSGNGSGGG GGGGSGGVGI"

  puts serv.searchSimple('fasta34', 'PDB', query)
  query = ">Test\nAGCTTTTCATTCTGACTGCAACGGGCAATATGTCTCTGTGTGGATTAAAAAAAGAGTGTCTGATAGCAGC"
  puts serv.searchParam('fastx34_t', 'PDB', query, '-n')

WSDL Methods

  • searchSimple(program, database, query)
  • searchParam(program, database, query, param)

References

Constants

SERVER_URI = BASE_URI + "Fasta.wsdl"

[Validate]