muscle.rb

Path: lib/bio/appl/muscle.rb
Last Update: Sun Dec 04 02:16:41 +0000 2011

bio/appl/muscle.rb - MUSCLE application wrapper class

Copyright:Copyright (C) 2006-2007 Jeffrey Blakeslee and John Conery University of Oregon <jeffb@uoregon.edu> Naohisa Goto <ng@bioruby.org>
License:The Ruby License
 $Id: muscle.rb,v 1.1 2007/07/16 12:25:50 ngoto Exp $

Bio::Muscle is a wrapper class to execute MUSCLE.

References

  • www.drive5.com/muscle/
  • Edgar R.C. MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res. 32: 1792-1797, 2004.
  • Edgar, R.C. MUSCLE: a multiple sequence alignment method with reduced time and space complexity. BMC Bioinformatics 5: 113, 2004.

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