report.rb

Path: lib/bio/appl/blat/report.rb
Last Update: Sun Dec 04 02:16:41 +0000 2011

bio/appl/blat/report.rb - BLAT result parser

Copyright:Copyright (C) 2004, 2006, 2008 Naohisa Goto <ng@bioruby.org>
License:The Ruby License
 $Id:$

BLAT result parser (psl / pslx format).

Important Notes

In BLAT results, the start position of a sequnece is numbered as 0. On the other hand, in many other homology search programs, the start position of a sequence is numbered as 1. To keep compatibility, the BLAT parser adds 1 to every position number.

References

Required files

bio  

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