Class Bio::PSORT
In: lib/bio/appl/psort.rb
lib/bio/appl/psort/report.rb
Parent: Object

A client for PSORT WWW Server

A client for PSORT WWW Server for predicting protein subcellular localization.

PSORT family members,

  1. PSORT
  2. PSORT II
  3. iPSORT
  4. PSORT-B psort.org
  5. WoLF-PSORT

References

Classes and Modules

Class Bio::PSORT::CGIDriver
Class Bio::PSORT::IPSORT
Class Bio::PSORT::PSORT1
Class Bio::PSORT::PSORT2
Class Bio::PSORT::PSORTB
Class Bio::PSORT::WoLF_PSORT

Constants

ServerURI = { :IMSUT => { :PSORT1 => URI.parse("http://psort.hgc.jp/cgi-bin/okumura.pl"), :PSORT2 => URI.parse("http://psort.hgc.jp/cgi-bin/runpsort.pl") }, :Okazaki => { :PSORT1 => URI.parse("http://psort.nibb.ac.jp/cgi-bin/okumura.pl"), :PSORT2 => URI.parse("http://psort.nibb.ac.jp/cgi-bin/runpsort.pl") }, :Peking => { :PSORT1 => URI.parse("http:///src.pku.edu.cn:8088/cgi-bin/okumura.pl"), :PSORT2 => URI.parse("http://src.pku.edu.cn:8088/cgi-bin/runpsort.pl") }, }   a Hash for PSORT official hosts:
  Key      value (host)
  -------  -----------------------
  IMSUT    psort.ims.u-tokyo.ac.jp
  Okazaki  psort.nibb.ac.jp
  Peking   srs.pku.edu.cn:8088

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