embl.rb

Path: lib/bio/db/embl/embl.rb
Last Update: Sun Dec 04 02:16:41 +0000 2011

bio/db/embl/embl.rb - EMBL database class

Copyright:Copyright (C) 2001-2007 Mitsuteru C. Nakao <n@bioruby.org> Jan Aerts <jan.aerts@bbsrc.ac.uk>
License:The Ruby License

$Id: embl.rb,v 1.29.2.7 2008/06/17 16:04:36 ngoto Exp $

Description

Parser class for EMBL database entry.

Examples

  emb = Bio::EMBL.new($<.read)
  emb.entry_id
  emb.each_cds do |cds|
    cds # A CDS in feature table.
  end
  emb.seq #=> "ACGT..."

References

Required files

date   bio/db   bio/db/embl/common   bio/compat/features   bio/compat/references   bio/sequence   bio/sequence/dblink  

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