Class | Bio::Alignment::FactoryTemplate::FileInFileOutWithTree |
In: |
lib/bio/alignment.rb
|
Parent: | FileInFileOut |
Template class for alignment application factory. The program needs: input: file (cannot accept stdin), format = fasta format output: file (parser should be specified by DEFAULT_PARSER) Tree (*.dnd) output is also supported.
output_dnd | [R] | alignment guide tree generated by the program (*.dnd file) |