Class Bio::DDBJ::XML::ClustalW
In: lib/bio/io/ddbjxml.rb
Parent: XML

ClustalW

Multiple seaquece alignment using ClustalW.

Examples

  serv = Bio::DDBJ::XML::ClustalW.new

  query = <<END
  > RABSTOUT   rabbit Guinness receptor
  LKMHLMGHLKMGLKMGLKGMHLMHLKHMHLMTYTYTTYRRWPLWMWLPDFGHAS
  ADSCVCAHGFAVCACFAHFDVCFGAVCFHAVCFAHVCFAAAVCFAVCAC
  > MUSNOSE   mouse nose drying factor
  mhkmmhkgmkhmhgmhmhglhmkmhlkmgkhmgkmkytytytryrwtqtqwtwyt
  fdgfdsgafdagfdgfsagdfavdfdvgavfsvfgvdfsvdgvagvfdv
  > HSHEAVEN    human Guinness receptor repeat
  mhkmmhkgmkhmhgmhmhg   lhmkmhlkmgkhmgkmk  ytytytryrwtqtqwtwyt
  fdgfdsgafdagfdgfsag   dfavdfdvgavfsvfgv  dfsvdgvagvfdv
  mhkmmhkgmkhmhgmhmhg   lhmkmhlkmgkhmgkmk  ytytytryrwtqtqwtwyt
  fdgfdsgafdagfdgfsag   dfavdfdvgavfsvfgv  dfsvdgvagvfdv
  END

  puts serv.analyzeSimple(query)
  puts serv.analyzeParam(query, '-align -matrix=blosum')

WSDL Methods

  • analyzeSimple(query)
  • analyzeParam(query, param)

References

Constants

SERVER_URI = BASE_URI + "ClustalW.wsdl"

[Validate]