Path: | lib/bio/appl/blat/report.rb |
Last Update: | Sun Dec 04 02:16:41 +0000 2011 |
Copyright: | Copyright (C) 2004, 2006, 2008 Naohisa Goto <ng@bioruby.org> |
License: | The Ruby License |
$Id:$
BLAT result parser (psl / pslx format).
In BLAT results, the start position of a sequnece is numbered as 0. On the other hand, in many other homology search programs, the start position of a sequence is numbered as 1. To keep compatibility, the BLAT parser adds 1 to every position number.