Path: | lib/bio/io/fetch.rb |
Last Update: | Sun Dec 04 02:16:41 +0000 2011 |
Copyright: | Copyright (C) 2002, 2005 Toshiaki Katayama <k@bioruby.org>, Copyright (C) 2006 Jan Aerts <jan.aerts@bbsrc.ac.uk> |
License: | The Ruby License |
$Id:$
Using BioRuby BioFetch server
br_server = Bio::Fetch.new() puts br_server.databases puts br_server.formats('embl') puts br_server.maxids
Using EBI BioFetch server
ebi_server = Bio::Fetch.new('http://www.ebi.ac.uk/cgi-bin/dbfetch') puts ebi_server.fetch('embl', 'J00231', 'raw') puts ebi_server.fetch('embl', 'J00231', 'html') puts Bio::Fetch.query('genbank', 'J00231') puts Bio::Fetch.query('genbank', 'J00231', 'raw', 'fasta')