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Packages that use StrandedFeature | |
org.biojava.bio.molbio | The classes and interfaces in this package cover common molecular biological techniques such as restriction digests and PCR. |
org.biojava.bio.seq | Classes and interfaces for defining biological sequences and informatics objects. |
org.biojava.bio.seq.homol | The classes and interfaces for defining sequence similarity and honology. |
org.biojava.bio.seq.impl | Standard in-memory implementations of Sequence and
Feature . |
org.biojava.bio.seq.projection | Code for projecting Feature objects into alternate coordinate systems. |
Uses of StrandedFeature in org.biojava.bio.molbio |
Subinterfaces of StrandedFeature in org.biojava.bio.molbio | |
interface |
RestrictionSite
RestrictionSite represents the recognition site of a
restriction enzyme. |
Uses of StrandedFeature in org.biojava.bio.seq |
Subinterfaces of StrandedFeature in org.biojava.bio.seq | |
interface |
ComponentFeature
Feature which represents a component in an assembly (contig). |
interface |
FramedFeature
Title: FramedFeature. |
interface |
RemoteFeature
A feature that indicates that there is some remote feature that can't be represented entirely on a single Sequence. |
Methods in org.biojava.bio.seq with parameters of type StrandedFeature | |
StrandedFeature.Strand |
ProjectedFeatureHolder.getStrand(StrandedFeature sf)
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Uses of StrandedFeature in org.biojava.bio.seq.homol |
Subinterfaces of StrandedFeature in org.biojava.bio.seq.homol | |
interface |
HomologyFeature
|
interface |
SimilarityPairFeature
SimilarityPairFeature describes a pairwise
similarity between two nucleotide sequences (as it extends
StrandedFeature ). |
Uses of StrandedFeature in org.biojava.bio.seq.impl |
Classes in org.biojava.bio.seq.impl that implement StrandedFeature | |
class |
SimpleFramedFeature
Title: SimpleFramedFeature. |
class |
SimpleHomologyFeature
|
class |
SimpleRemoteFeature
A no-frills implementation of a remote feature. |
class |
SimpleRestrictionSite
SimpleRestrictionSite represents the recognition site
of a restriction enzyme. |
class |
SimpleSimilarityPairFeature
SimpleSimilarityPairFeature represents a similarity
between a query sequence and a subject sequence as produced by a
search program. |
class |
SimpleStrandedFeature
A no-frills implementation of StrandedFeature. |
Uses of StrandedFeature in org.biojava.bio.seq.projection |
Classes in org.biojava.bio.seq.projection that implement StrandedFeature | |
class |
ProjectedStrandedFeature
Internal class used by ProjectedFeatureHolder to wrap StrandedFeatures. |
Methods in org.biojava.bio.seq.projection with parameters of type StrandedFeature | |
StrandedFeature.Strand |
ProjectionContext.getStrand(StrandedFeature f)
Get the strand of the projected feature. |
Constructors in org.biojava.bio.seq.projection with parameters of type StrandedFeature | |
ProjectedStrandedFeature(StrandedFeature f,
ProjectionContext ctx)
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