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Hierarchy For Package org.biojava.bio.seq.io.agave
Package Hierarchies:
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Class Hierarchy
class java.lang.Object
class org.biojava.bio.seq.io.agave.
AGAVEDbId
class org.biojava.bio.seq.io.agave.
AGAVEIdAlias
class org.biojava.bio.seq.io.agave.
AGAVEMapLocation
class org.biojava.bio.seq.io.agave.
AGAVEMapPosition
class org.biojava.bio.seq.io.agave.
AGAVEMatchRegion
class org.biojava.bio.seq.io.agave.
AGAVEProperty
class org.biojava.bio.seq.io.agave.
AGAVEQueryRegion
class org.biojava.bio.seq.io.agave.
AGAVERelatedAnnot
class org.biojava.bio.seq.io.agave.
AgaveWriter
class org.biojava.bio.seq.io.agave.
AgaveWriter.Indent
class org.biojava.bio.seq.io.agave.
AGAVEXref
class org.biojava.bio.seq.io.agave.
AGAVEXrefs
class org.biojava.bio.seq.io.agave.
ElementRecognizer.AllElementRecognizer
(implements org.biojava.bio.seq.io.agave.
ElementRecognizer
)
class org.biojava.bio.seq.io.agave.
ElementRecognizer.ByLocalName
(implements org.biojava.bio.seq.io.agave.
ElementRecognizer
)
class org.biojava.bio.seq.io.agave.
ElementRecognizer.ByNSName
(implements org.biojava.bio.seq.io.agave.
ElementRecognizer
)
class org.biojava.bio.seq.io.agave.
ElementRecognizer.HasAttribute
(implements org.biojava.bio.seq.io.agave.
ElementRecognizer
)
class org.biojava.bio.seq.io.agave.
SAX2StAXAdaptor
(implements org.xml.sax.ContentHandler)
class org.biojava.bio.seq.io.agave.
SimpleAnnotFilter
(implements org.biojava.bio.seq.io.agave.
AGAVEAnnotFilter
)
class org.biojava.bio.seq.io.agave.
Agave2AgaveAnnotFilter
class org.biojava.bio.seq.io.agave.
Embl2AgaveAnnotFilter
class org.biojava.bio.seq.io.agave.
StAXContentHandlerBase
(implements org.biojava.bio.seq.io.agave.
StAXContentHandler
)
class org.biojava.bio.seq.io.agave.
StAXFeatureHandler
class org.biojava.bio.seq.io.agave.
AGAVEAssemblyHandler
(implements org.biojava.bio.seq.io.agave.
SequenceHandler
)
class org.biojava.bio.seq.io.agave.
AGAVEBioSeqHandler
(implements org.biojava.bio.seq.io.agave.
AGAVEBioSeqCallbackItf
, org.biojava.bio.seq.io.agave.
SequenceHandler
)
class org.biojava.bio.seq.io.agave.
AGAVEBioSequenceHandler
class org.biojava.bio.seq.io.agave.
AGAVECdsHandler
class org.biojava.bio.seq.io.agave.
AGAVEChromosomeHandler
(implements org.biojava.bio.seq.io.agave.
AGAVEChromosomeCallbackItf
, org.biojava.bio.seq.io.agave.
SequenceHandler
)
class org.biojava.bio.seq.io.agave.
AGAVEClassificationHandler
(implements org.biojava.bio.seq.io.agave.
AGAVEIdAliasCallbackItf
)
class org.biojava.bio.seq.io.agave.
AGAVECompResultHandler
(implements org.biojava.bio.seq.io.agave.
AGAVEFeatureCallbackItf
)
class org.biojava.bio.seq.io.agave.
AGAVEComputationHandler
class org.biojava.bio.seq.io.agave.
AGAVEContigHandler
(implements org.biojava.bio.seq.io.agave.
AGAVEContigCallbackItf
, org.biojava.bio.seq.io.agave.
SequenceHandler
)
class org.biojava.bio.seq.io.agave.
AGAVEEvidenceHandler
(implements org.biojava.bio.seq.io.agave.
AGAVEEvidenceCallbackItf
)
class org.biojava.bio.seq.io.agave.
AGAVEFragmentOrderHandler
class org.biojava.bio.seq.io.agave.
AGAVEFragmentOrientationHandler
(implements org.biojava.bio.seq.io.agave.
AGAVEFeatureCallbackItf
)
class org.biojava.bio.seq.io.agave.
AGAVEGeneHandler
(implements org.biojava.bio.seq.io.agave.
AGAVEFeatureCallbackItf
)
class org.biojava.bio.seq.io.agave.
AGAVEHandler
(implements org.biojava.bio.seq.io.agave.
AGAVECallbackItf
)
class org.biojava.bio.seq.io.agave.
AGAVEMrnaHandler
class org.biojava.bio.seq.io.agave.
AGAVEPredictedProteinHandler
class org.biojava.bio.seq.io.agave.
AGAVEQueryRegionPropHandler
(implements org.biojava.bio.seq.io.agave.
AGAVEDbIdCallbackItf
)
class org.biojava.bio.seq.io.agave.
AGAVEResultGroupHandler
class org.biojava.bio.seq.io.agave.
AGAVESeqFeatureHandler
(implements org.biojava.bio.seq.io.agave.
AGAVEFeatureCallbackItf
)
class org.biojava.bio.seq.io.agave.
AGAVESeqMapHandler
class org.biojava.bio.seq.io.agave.
AGAVETranscriptHandler
(implements org.biojava.bio.seq.io.agave.
AGAVEEvidenceCallbackItf
)
class org.biojava.bio.seq.io.agave.
AGAVEUnorderedFragmentsHandler
class org.biojava.bio.seq.io.agave.
StAXPropertyHandler
class org.biojava.bio.seq.io.agave.
AGAVEAltIdsPropHandler
(implements org.biojava.bio.seq.io.agave.
AGAVEDbIdCallbackItf
)
class org.biojava.bio.seq.io.agave.
AGAVEAnnotationsHandler
class org.biojava.bio.seq.io.agave.
AGAVEDbIdPropHandler
class org.biojava.bio.seq.io.agave.
AGAVEDescPropHandler
class org.biojava.bio.seq.io.agave.
AGAVEElementIdPropHandler
class org.biojava.bio.seq.io.agave.
AGAVEExonsPropHandler
class org.biojava.bio.seq.io.agave.
AGAVEIdAliasPropHandler
class org.biojava.bio.seq.io.agave.
AGAVEKeywordPropHandler
class org.biojava.bio.seq.io.agave.
AGAVEMapLocationPropHandler
class org.biojava.bio.seq.io.agave.
AGAVEMapPositionPropHandler
(implements org.biojava.bio.seq.io.agave.
AGAVEDbIdCallbackItf
)
class org.biojava.bio.seq.io.agave.
AGAVEMatchAlignPropHandler
class org.biojava.bio.seq.io.agave.
AGAVEMatchDescPropHandler
class org.biojava.bio.seq.io.agave.
AGAVEMatchRegionPropHandler
(implements org.biojava.bio.seq.io.agave.
AGAVEDbIdCallbackItf
, org.biojava.bio.seq.io.agave.
AGAVEEvidenceCallbackItf
)
class org.biojava.bio.seq.io.agave.
AGAVENotePropHandler
class org.biojava.bio.seq.io.agave.
AGAVEQualifierPropHandler
class org.biojava.bio.seq.io.agave.
AGAVERelatedAnnotPropHandler
(implements org.biojava.bio.seq.io.agave.
AGAVEEvidenceCallbackItf
)
class org.biojava.bio.seq.io.agave.
AGAVEResultPropertyPropHandler
class org.biojava.bio.seq.io.agave.
AGAVESciPropertyPropHandler
class org.biojava.bio.seq.io.agave.
AGAVESeqLocationPropHandler
class org.biojava.bio.seq.io.agave.
AGAVESeqPropHandler
class org.biojava.bio.seq.io.agave.
AGAVEViewPropHandler
class org.biojava.bio.seq.io.agave.
AGAVEXrefPropHandler
(implements org.biojava.bio.seq.io.agave.
AGAVEDbIdCallbackItf
, org.biojava.bio.seq.io.agave.
AGAVEDbIdPropCallbackItf
)
class org.biojava.bio.seq.io.agave.
AGAVEXrefPropPropHandler
class org.biojava.bio.seq.io.agave.
AGAVEXrefsPropHandler
(implements org.biojava.bio.seq.io.agave.
AGAVEDbIdCallbackItf
, org.biojava.bio.seq.io.agave.
AGAVEXrefCallbackItf
)
class org.biojava.bio.seq.io.agave.
UtilHelper
Interface Hierarchy
interface org.biojava.bio.seq.io.agave.
AGAVEAnnotFilter
interface org.biojava.bio.seq.io.agave.
AGAVEAnnotFilterFactory
interface org.biojava.bio.seq.io.agave.
AGAVEBioSeqCallbackItf
interface org.biojava.bio.seq.io.agave.
AGAVECallbackItf
interface org.biojava.bio.seq.io.agave.
AGAVEChromosomeCallbackItf
interface org.biojava.bio.seq.io.agave.
AGAVEContigCallbackItf
interface org.biojava.bio.seq.io.agave.
AGAVEDbIdCallbackItf
interface org.biojava.bio.seq.io.agave.
AGAVEDbIdPropCallbackItf
interface org.biojava.bio.seq.io.agave.
AGAVEEvidenceCallbackItf
interface org.biojava.bio.seq.io.agave.
AGAVEFeatureCallbackItf
interface org.biojava.bio.seq.io.agave.
AGAVEIdAliasCallbackItf
interface org.biojava.bio.seq.io.agave.
AGAVEXrefCallbackItf
interface org.biojava.bio.seq.io.agave.
DelegationManager
interface org.biojava.bio.seq.io.agave.
ElementRecognizer
interface org.biojava.bio.seq.io.agave.
SequenceHandler
interface org.biojava.bio.seq.io.agave.
StAXContentHandler
interface org.biojava.bio.seq.io.agave.
StAXHandlerFactory
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