org.biojava.bio.seq.ragbag
Class RagbagMap.MapElement

java.lang.Object
  extended byorg.biojava.bio.seq.ragbag.RagbagMap.MapElement
Enclosing class:
RagbagMap

public class RagbagMap.MapElement
extends java.lang.Object

class that represents a single mapping in mapFile


Method Summary
 RangeLocation getDstLocation()
           
 java.lang.String getFilename()
           
 java.lang.String getRef()
           
 RangeLocation getSrcLocation()
           
 StrandedFeature.Strand getStrand()
           
 
Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
 

Method Detail

getRef

public java.lang.String getRef()

getFilename

public java.lang.String getFilename()

getSrcLocation

public RangeLocation getSrcLocation()

getDstLocation

public RangeLocation getDstLocation()

getStrand

public StrandedFeature.Strand getStrand()