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java.lang.Objectorg.biojava.utils.AbstractChangeable
org.biojava.bio.seq.impl.SimpleFeature
org.biojava.bio.seq.impl.SimpleStrandedFeature
org.biojava.bio.seq.impl.SimpleHomologyFeature
Nested Class Summary |
Nested classes inherited from class org.biojava.bio.seq.homol.HomologyFeature |
HomologyFeature.Template |
Nested classes inherited from class org.biojava.bio.seq.StrandedFeature |
StrandedFeature.Strand |
Nested classes inherited from class org.biojava.bio.seq.Feature |
Feature.ByLocationComparator |
Nested classes inherited from class org.biojava.bio.seq.FeatureHolder |
FeatureHolder.EmptyFeatureHolder |
Nested classes inherited from class org.biojava.bio.Annotatable |
Annotatable.AnnotationForwarder |
Field Summary |
Fields inherited from interface org.biojava.bio.seq.StrandedFeature |
NEGATIVE, POSITIVE, UNKNOWN |
Fields inherited from interface org.biojava.bio.seq.Feature |
byLocationOrder, LOCATION, PROPERTY_DATA_KEY, SOURCE, TYPE |
Fields inherited from interface org.biojava.bio.seq.FeatureHolder |
EMPTY_FEATURE_HOLDER, FEATURES, SCHEMA |
Fields inherited from interface org.biojava.bio.Annotatable |
ANNOTATION |
Constructor Summary | |
SimpleHomologyFeature(Sequence sourceSeq,
FeatureHolder parent,
HomologyFeature.Template template)
|
Method Summary | |
protected void |
fillTemplate(HomologyFeature.Template ft)
|
Homology |
getHomology()
|
Feature.Template |
makeTemplate()
Create a new Template that could be used to generate a feature identical to this one. |
java.lang.String |
toString()
|
Methods inherited from class org.biojava.bio.seq.impl.SimpleStrandedFeature |
fillTemplate, getStrand, getSymbols |
Methods inherited from class org.biojava.bio.seq.impl.SimpleFeature |
containsFeature, countFeatures, createFeature, equals, featureHolderAllocated, features, fillTemplate, filter, filter, getAnnotation, getChangeSupport, getFeatureHolder, getLocation, getParent, getSchema, getSequence, getSource, getType, hashCode, realizeFeature, removeFeature, setLocation, setSource, setType |
Methods inherited from class org.biojava.utils.AbstractChangeable |
addChangeListener, addChangeListener, generateChangeSupport, hasListeners, isUnchanging, removeChangeListener, removeChangeListener |
Methods inherited from class java.lang.Object |
clone, finalize, getClass, notify, notifyAll, wait, wait, wait |
Methods inherited from interface org.biojava.bio.seq.StrandedFeature |
getStrand, getSymbols |
Methods inherited from interface org.biojava.bio.seq.Feature |
features, getLocation, getParent, getSequence, getSource, getType, setLocation, setSource, setType |
Methods inherited from interface org.biojava.bio.seq.FeatureHolder |
containsFeature, countFeatures, createFeature, filter, filter, getSchema, removeFeature |
Methods inherited from interface org.biojava.utils.Changeable |
addChangeListener, addChangeListener, isUnchanging, removeChangeListener, removeChangeListener |
Methods inherited from interface org.biojava.bio.Annotatable |
getAnnotation |
Constructor Detail |
public SimpleHomologyFeature(Sequence sourceSeq, FeatureHolder parent, HomologyFeature.Template template) throws java.lang.IllegalArgumentException, IllegalAlphabetException
Method Detail |
public Homology getHomology()
getHomology
in interface HomologyFeature
public Feature.Template makeTemplate()
Feature
makeTemplate
in interface Feature
makeTemplate
in class SimpleStrandedFeature
protected void fillTemplate(HomologyFeature.Template ft)
public java.lang.String toString()
toString
in class SimpleStrandedFeature
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