Uses of Interface
org.biojava.bio.seq.ragbag.RagbagSequenceFactory

Packages that use RagbagSequenceFactory
org.biojava.bio.seq.ragbag The Ragbag package is a set of classes for setting up a virtual sequence contig without the need for writing Biojava code. 
 

Uses of RagbagSequenceFactory in org.biojava.bio.seq.ragbag
 

Classes in org.biojava.bio.seq.ragbag that implement RagbagSequenceFactory
 class RagbagFilteredCachedSeqFactory
          class that is passed to a RagbagAssembly to use a SoftReferenceCache-backed RagbagCachedSequences.
 class RagbagFixedCacheSeqFactory
          class that is passed to a RagbagAssembly to use a FixedSizeCache cache-backed RagbagCachedSequences.
 class RagbagSoftRefSeqFactory
          class that is passed to a RagbagAssembly to use a SoftReferenceCache-backed RagbagCachedSequences.
 class RagbagUncachedSeqFactory
          class that is passed to a RagbagAssembly to use the vanilla uncached RagbagSequence object.
 

Constructors in org.biojava.bio.seq.ragbag with parameters of type RagbagSequenceFactory
RagbagAssembly(java.lang.String name, java.lang.String urn, java.io.File thisDir, RagbagSequenceFactory seqFactory, RagbagComponentDirectory compDir)