Uses of Interface
org.biojava.bio.seq.StrandedFeature

Packages that use StrandedFeature
org.biojava.bio.molbio The classes and interfaces in this package cover common molecular biological techniques such as restriction digests and PCR. 
org.biojava.bio.seq Classes and interfaces for defining biological sequences and informatics objects. 
org.biojava.bio.seq.homol The classes and interfaces for defining sequence similarity and honology. 
org.biojava.bio.seq.impl Standard in-memory implementations of Sequence and Feature
org.biojava.bio.seq.projection Code for projecting Feature objects into alternate coordinate systems. 
 

Uses of StrandedFeature in org.biojava.bio.molbio
 

Subinterfaces of StrandedFeature in org.biojava.bio.molbio
 interface RestrictionSite
          RestrictionSite represents the recognition site of a restriction enzyme.
 

Uses of StrandedFeature in org.biojava.bio.seq
 

Subinterfaces of StrandedFeature in org.biojava.bio.seq
 interface ComponentFeature
          Feature which represents a component in an assembly (contig).
 interface FramedFeature
          Title: FramedFeature.
 interface RemoteFeature
          A feature that indicates that there is some remote feature that can't be represented entirely on a single Sequence.
 

Methods in org.biojava.bio.seq with parameters of type StrandedFeature
 StrandedFeature.Strand ProjectedFeatureHolder.getStrand(StrandedFeature sf)
           
 

Uses of StrandedFeature in org.biojava.bio.seq.homol
 

Subinterfaces of StrandedFeature in org.biojava.bio.seq.homol
 interface HomologyFeature
           
 interface SimilarityPairFeature
          SimilarityPairFeature describes a pairwise similarity between two nucleotide sequences (as it extends StrandedFeature).
 

Uses of StrandedFeature in org.biojava.bio.seq.impl
 

Classes in org.biojava.bio.seq.impl that implement StrandedFeature
 class SimpleFramedFeature
          Title: SimpleFramedFeature.
 class SimpleHomologyFeature
           
 class SimpleRemoteFeature
          A no-frills implementation of a remote feature.
 class SimpleRestrictionSite
          SimpleRestrictionSite represents the recognition site of a restriction enzyme.
 class SimpleSimilarityPairFeature
          SimpleSimilarityPairFeature represents a similarity between a query sequence and a subject sequence as produced by a search program.
 class SimpleStrandedFeature
          A no-frills implementation of StrandedFeature.
 

Uses of StrandedFeature in org.biojava.bio.seq.projection
 

Classes in org.biojava.bio.seq.projection that implement StrandedFeature
 class ProjectedStrandedFeature
          Internal class used by ProjectedFeatureHolder to wrap StrandedFeatures.
 

Methods in org.biojava.bio.seq.projection with parameters of type StrandedFeature
 StrandedFeature.Strand ProjectionContext.getStrand(StrandedFeature f)
          Get the strand of the projected feature.
 

Constructors in org.biojava.bio.seq.projection with parameters of type StrandedFeature
ProjectedStrandedFeature(StrandedFeature f, ProjectionContext ctx)