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Packages that use org.biojava.bio.alignment | |
org.biojava.bio.alignment |
Implementation of the Alignment interface. |
Classes in org.biojava.bio.alignment used by org.biojava.bio.alignment | |
AbstractULAlignment
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AlignmentElement
AlignmentElement is a class which represents a SymbolList and its location within an Alignment This is for use in UnequalLengthAlignments and ARAlignments. |
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ARAlignment
ARAlignment is an interface that defines methods for adding and removing seqeunces from an Alignment. |
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EditableAlignment
EditableAlignment is an interface that defines methods for shifting bases within an Alignment. |
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IllegalAlignmentEditException
The usual reason for throwing an IllegalAlignmentEditException is that you are trying to shift a group of bases in such a way that it would require deleting bases. |
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UnequalLengthAlignment
UnequalLengthAlignment has the following behavior. |
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