Uses of Interface
org.biojava.bio.program.ssaha.SearchListener

Packages that use SearchListener
org.biojava.bio.program.ssaha SSAHA sequence searching API. 
 

Uses of SearchListener in org.biojava.bio.program.ssaha
 

Classes in org.biojava.bio.program.ssaha that implement SearchListener
 class HitMerger
          A listener that merges overlapping hits and culls all hits under a given length.
 

Methods in org.biojava.bio.program.ssaha with parameters of type SearchListener
 void CompactedDataStore.search(java.lang.String seqID, SymbolList symList, SearchListener listener)
           
 void CompactedDataStore.fireHits(int word, int offset, SearchListener listener)
           
 void DataStore.search(java.lang.String id, SymbolList symList, SearchListener listener)
          Search the DataStore with a symbol list.
 

Constructors in org.biojava.bio.program.ssaha with parameters of type SearchListener
HitMerger(SearchListener delegate, int minLength)
          Build a new HitMerger that will pass events on to a delegate.