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java.lang.Objectorg.biojava.utils.AbstractChangeable
org.biojava.bio.dp.SimpleEmissionState
org.biojava.bio.dp.MagicalState
Start/end state for HMMs.
All MagicalState objects emit over MAGICAL_ALPHABET, which only contains MAGICAL_STATE.
Nested Class Summary |
Nested classes inherited from class org.biojava.bio.Annotatable |
Annotatable.AnnotationForwarder |
Field Summary |
Fields inherited from class org.biojava.bio.dp.SimpleEmissionState |
annotationForwarder |
Fields inherited from interface org.biojava.bio.dp.EmissionState |
ADVANCE, DISTRIBUTION |
Fields inherited from interface org.biojava.bio.Annotatable |
ANNOTATION |
Method Summary | |
static MagicalState |
getMagicalState(Alphabet alphabet,
int heads)
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Methods inherited from class org.biojava.bio.dp.SimpleEmissionState |
getAdvance, getAnnotation, getBases, getChangeSupport, getDistribution, getMatches, getName, getSymbols, getToken, registerWithTrainer, setAdvance, setAnnotation, setDistribution, setName |
Methods inherited from class org.biojava.utils.AbstractChangeable |
addChangeListener, addChangeListener, generateChangeSupport, hasListeners, isUnchanging, removeChangeListener, removeChangeListener |
Methods inherited from class java.lang.Object |
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait |
Methods inherited from interface org.biojava.utils.Changeable |
addChangeListener, addChangeListener, isUnchanging, removeChangeListener, removeChangeListener |
Method Detail |
public static MagicalState getMagicalState(Alphabet alphabet, int heads)
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