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Packages that use WeightMatrix | |
org.biojava.bio.dp | HMM and Dynamic Programming Algorithms. |
Uses of WeightMatrix in org.biojava.bio.dp |
Classes in org.biojava.bio.dp that implement WeightMatrix | |
class |
SimpleWeightMatrix
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Methods in org.biojava.bio.dp that return WeightMatrix | |
static WeightMatrix |
XmlMarkovModel.readMatrix(org.w3c.dom.Element root)
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Methods in org.biojava.bio.dp with parameters of type WeightMatrix | |
static void |
XmlMarkovModel.writeMatrix(WeightMatrix matrix,
java.io.PrintStream out)
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static double |
DP.scoreWeightMatrix(WeightMatrix matrix,
SymbolList symList,
int start)
Scores the SymbolList from symbol start to symbol (start+columns) with a weight matrix. |
Constructors in org.biojava.bio.dp with parameters of type WeightMatrix | |
WeightMatrixAnnotator(WeightMatrix wm,
double threshold)
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WMAsMM(WeightMatrix wm)
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