Uses of Class
org.biojava.bio.symbol.RangeLocation

Packages that use RangeLocation
org.biojava.bio.gui.sequence Graphical displays of biological sequences and associated annotations. 
org.biojava.bio.seq.io.game Event-driven parsing system for the Gene Annotation Markup Elements (GAME). 
org.biojava.bio.seq.ragbag The Ragbag package is a set of classes for setting up a virtual sequence contig without the need for writing Biojava code. 
org.biojava.bio.symbol Representation of the Symbols that make up a sequence, and locations within them. 
 

Uses of RangeLocation in org.biojava.bio.gui.sequence
 

Methods in org.biojava.bio.gui.sequence that return RangeLocation
 RangeLocation SequenceRenderContext.getRange()
          The range of the SymbolList to render.
 RangeLocation TranslatedSequencePanel.getRange()
          getRange returns a RangeLocation representing the region of the sequence currently being rendered.
 RangeLocation HeadlessRenderContext.getRange()
           
 RangeLocation SubPairwiseRenderContext.getRange()
           
 RangeLocation SubPairwiseRenderContext.getSecondaryRange()
           
 RangeLocation PairwiseSequencePanel.getRange()
          getRange returns a RangeLocation representing the region of the sequence currently being rendered.
 RangeLocation PairwiseSequencePanel.getSecondaryRange()
          getSecondaryRange returns a RangeLocation representing the region of the secondary sequence currently being rendered.
 RangeLocation SequencePoster.getRange()
           
 RangeLocation PairwiseRenderContext.getSecondaryRange()
          getSecondaryRange returns the range of the secondary sequence currently rendered.
 RangeLocation SubSequenceRenderContext.getRange()
           
 RangeLocation SequencePanel.getRange()
           
 

Methods in org.biojava.bio.gui.sequence with parameters of type RangeLocation
 void SequencePanel.setRange(RangeLocation range)
           
 

Constructors in org.biojava.bio.gui.sequence with parameters of type RangeLocation
HeadlessRenderContext(Sequence seq, RangeLocation range, int width)
           
SubPairwiseRenderContext(PairwiseRenderContext context, SymbolList symbols, SymbolList secondarySymbols, FeatureHolder features, FeatureHolder secondaryFeatures, RangeLocation range, RangeLocation secondaryRange)
          Creates a new SubPairwiseRenderContext.
SubSequenceRenderContext(SequenceRenderContext src, SymbolList symbols, FeatureHolder features, RangeLocation range)
           
 

Uses of RangeLocation in org.biojava.bio.seq.io.game
 

Methods in org.biojava.bio.seq.io.game with parameters of type RangeLocation
 void GAMEFeatureSetHandler.reportExon(RangeLocation range, StrandedFeature.Strand strand)
           
 void GAMETranscriptCallbackItf.reportExon(RangeLocation range, StrandedFeature.Strand strand)
          Allows nesting class that manages a transcript template to gain information about its extent from nested elements that represent exons.
 

Uses of RangeLocation in org.biojava.bio.seq.ragbag
 

Methods in org.biojava.bio.seq.ragbag that return RangeLocation
 RangeLocation RagbagMap.MapElement.getSrcLocation()
           
 RangeLocation RagbagMap.MapElement.getDstLocation()
           
 

Uses of RangeLocation in org.biojava.bio.symbol
 

Subclasses of RangeLocation in org.biojava.bio.symbol
 class MergeLocation
          Produced by LocationTools as a result of union operations.