Uses of Interface
org.biojava.bio.gui.sequence.PairwiseRenderContext

Packages that use PairwiseRenderContext
org.biojava.bio.gui.sequence Graphical displays of biological sequences and associated annotations. 
 

Uses of PairwiseRenderContext in org.biojava.bio.gui.sequence
 

Classes in org.biojava.bio.gui.sequence that implement PairwiseRenderContext
 class PairwiseSequencePanel
          A PairwiseSequencePanel is a panel that displays a pair of sequences; one sequence (the primary) may be either left-to-right (HORIZONTAL) or from top-to-bottom (VERTICAL).
 class SubPairwiseRenderContext
          SubPairwiseRenderContext is a rendering context which wraps a delegate context and effectively hides some of the delegate's properties with its own.
 

Methods in org.biojava.bio.gui.sequence that return PairwiseRenderContext
protected  PairwiseRenderContext PairwiseFilteringRenderer.getSubContext(PairwiseRenderContext context)
          getSubContext creates a new context which has FeatureHolders filtered using the current filter.
 

Methods in org.biojava.bio.gui.sequence with parameters of type PairwiseRenderContext
 void CrosshairRenderer.paint(java.awt.Graphics2D g2, PairwiseRenderContext context)
           
 SequenceViewerEvent CrosshairRenderer.processMouseEvent(PairwiseRenderContext context, java.awt.event.MouseEvent me, java.util.List path)
          processMouseEvent processes any MouseEvents directed to the renderer.
 void PairwiseFilteringRenderer.paint(java.awt.Graphics2D g2, PairwiseRenderContext context)
           
 SequenceViewerEvent PairwiseFilteringRenderer.processMouseEvent(PairwiseRenderContext context, java.awt.event.MouseEvent me, java.util.List path)
           
protected  PairwiseRenderContext PairwiseFilteringRenderer.getSubContext(PairwiseRenderContext context)
          getSubContext creates a new context which has FeatureHolders filtered using the current filter.
 void PairwiseDiagonalRenderer.paint(java.awt.Graphics2D g2, PairwiseRenderContext context)
          paint renders the feature as a simple line.
 SequenceViewerEvent PairwiseDiagonalRenderer.processMouseEvent(PairwiseRenderContext context, java.awt.event.MouseEvent me, java.util.List path)
          processMouseEvent acts on a mouse gesture.
 void PairwiseSequenceRenderer.paint(java.awt.Graphics2D g2, PairwiseRenderContext prc)
          paints some or all of the information about the sequence pair.
 SequenceViewerEvent PairwiseSequenceRenderer.processMouseEvent(PairwiseRenderContext prc, java.awt.event.MouseEvent me, java.util.List path)
          processMouseEvent produces a SequenceViewerEvent in response to a mouse gesture.
 void PairwiseOverlayRenderer.paint(java.awt.Graphics2D g2, PairwiseRenderContext context)
          paint applies all renderers in the order in which they were added.
 SequenceViewerEvent PairwiseOverlayRenderer.processMouseEvent(PairwiseRenderContext context, java.awt.event.MouseEvent me, java.util.List path)
          processMouseEvent produces a SequenceViewerEvent in response to a mouse gesture.
 

Constructors in org.biojava.bio.gui.sequence with parameters of type PairwiseRenderContext
SubPairwiseRenderContext(PairwiseRenderContext context, SymbolList symbols, SymbolList secondarySymbols, FeatureHolder features, FeatureHolder secondaryFeatures, RangeLocation range, RangeLocation secondaryRange)
          Creates a new SubPairwiseRenderContext.