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Hierarchy For Package org.biojava.bio.symbol
Package Hierarchies:
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Class Hierarchy
class java.lang.Object
class org.biojava.utils.
AbstractChangeable
(implements org.biojava.utils.
Changeable
)
class org.biojava.bio.symbol.
AbstractAlphabet
(implements org.biojava.bio.symbol.
FiniteAlphabet
, java.io.Serializable)
class org.biojava.bio.symbol.
IntegerAlphabet.SubIntegerAlphabet
class org.biojava.bio.symbol.
SimpleAlphabet
(implements java.io.Serializable)
class org.biojava.bio.symbol.
SingletonAlphabet
(implements org.biojava.bio.symbol.
FiniteAlphabet
, java.io.Serializable)
class org.biojava.bio.symbol.
AbstractSymbol
(implements org.biojava.bio.symbol.
Symbol
)
class org.biojava.bio.symbol.
FundamentalAtomicSymbol
(implements org.biojava.bio.symbol.
AtomicSymbol
, java.io.Serializable)
class org.biojava.bio.symbol.SimpleSymbol (implements java.io.Serializable, org.biojava.bio.symbol.
Symbol
)
class org.biojava.bio.symbol.SimpleBasisSymbol (implements org.biojava.bio.symbol.
BasisSymbol
)
class org.biojava.bio.symbol.
SimpleAtomicSymbol
(implements org.biojava.bio.symbol.
AtomicSymbol
)
class org.biojava.bio.symbol.
AbstractSymbolList
(implements org.biojava.bio.symbol.
SymbolList
)
class org.biojava.bio.symbol.
DummySymbolList
(implements java.io.Serializable)
class org.biojava.bio.symbol.
PackedDnaSymbolList
(implements java.io.Serializable)
class org.biojava.bio.symbol.
PackedSymbolList
(implements java.io.Serializable)
class org.biojava.bio.symbol.
SimpleAlignment
(implements org.biojava.bio.symbol.
Alignment
, java.io.Serializable)
class org.biojava.bio.symbol.
SimpleGappedSymbolList
(implements org.biojava.bio.symbol.
GappedSymbolList
, java.io.Serializable)
class org.biojava.bio.symbol.
SimpleSymbolList
(implements org.biojava.utils.
ChangeListener
, java.io.Serializable)
class org.biojava.bio.symbol.
AbstractLocation
(implements org.biojava.bio.symbol.
Location
, java.io.Serializable)
class org.biojava.bio.symbol.
AbstractRangeLocation
class org.biojava.bio.symbol.
FuzzyLocation
(implements java.io.Serializable)
class org.biojava.bio.symbol.
PointLocation
(implements org.biojava.bio.symbol.
Location
, java.io.Serializable)
class org.biojava.bio.symbol.
RangeLocation
(implements java.io.Serializable)
class org.biojava.bio.symbol.
MergeLocation
class org.biojava.bio.symbol.
FuzzyPointLocation
class org.biojava.bio.symbol.
AbstractLocationDecorator
(implements org.biojava.bio.symbol.
Location
)
class org.biojava.bio.symbol.
BetweenLocation
class org.biojava.bio.symbol.
CircularLocation
class org.biojava.bio.symbol.
Alignment.SymbolListIterator
(implements java.util.Iterator)
class org.biojava.bio.symbol.
AlphabetManager
class org.biojava.utils.
ChangeForwarder
(implements org.biojava.utils.
ChangeListener
)
class org.biojava.bio.symbol.
AbstractSymbolList.EditScreener
class org.biojava.bio.symbol.
AbstractSymbolList.EditTranslater
class org.biojava.bio.symbol.
DNAAmbPack
(implements org.biojava.bio.symbol.
Packing
, java.io.Serializable)
class org.biojava.bio.symbol.
DNANoAmbPack
(implements org.biojava.bio.symbol.
Packing
, java.io.Serializable)
class org.biojava.bio.symbol.
Edit
(implements java.io.Serializable)
class org.biojava.bio.symbol.
LocationTools
class org.biojava.bio.symbol.
MotifTools
class org.biojava.bio.symbol.
PackedSymbolListFactory
(implements org.biojava.bio.symbol.
SymbolListFactory
)
class org.biojava.bio.symbol.
PackingFactory
class org.biojava.bio.symbol.
SimpleGappedSymbolList.Block
(implements java.io.Serializable)
class org.biojava.bio.symbol.
SimpleSymbolListFactory
(implements org.biojava.bio.symbol.
SymbolListFactory
)
class org.biojava.bio.symbol.
SimpleSymbolPropertyTable
(implements org.biojava.bio.symbol.
SymbolPropertyTable
)
class org.biojava.bio.symbol.
SimpleTranslationTable
(implements java.io.Serializable, org.biojava.bio.symbol.
TranslationTable
)
class org.biojava.bio.symbol.
SimpleReversibleTranslationTable
(implements org.biojava.bio.symbol.
ReversibleTranslationTable
, java.io.Serializable)
class org.biojava.bio.symbol.
SuffixTree
(implements java.io.Serializable)
class org.biojava.bio.symbol.
SuffixTree.SuffixNode
(implements java.io.Serializable)
class org.biojava.bio.symbol.
SymbolListViews
class java.lang.Throwable (implements java.io.Serializable)
class java.lang.Exception
class org.biojava.utils.
NestedException
class org.biojava.bio.
BioException
class org.biojava.bio.symbol.
IllegalAlphabetException
class org.biojava.bio.symbol.
IllegalSymbolException
class org.biojava.bio.symbol.
UkkonenSuffixTree
class org.biojava.utils.
Unchangeable
(implements org.biojava.utils.
Changeable
)
class org.biojava.bio.symbol.
DoubleAlphabet
(implements org.biojava.bio.symbol.
Alphabet
, java.io.Serializable)
class org.biojava.bio.symbol.
DoubleAlphabet.DoubleRange
(implements org.biojava.bio.symbol.
BasisSymbol
, java.io.Serializable)
class org.biojava.bio.symbol.
DoubleAlphabet.DoubleSymbol
(implements org.biojava.bio.symbol.
AtomicSymbol
, java.io.Serializable)
class org.biojava.bio.symbol.
DoubleAlphabet.SubDoubleAlphabet
(implements org.biojava.bio.symbol.
Alphabet
, java.io.Serializable)
class org.biojava.bio.symbol.
IntegerAlphabet
(implements org.biojava.bio.symbol.
Alphabet
, java.io.Serializable)
class org.biojava.bio.symbol.
IntegerAlphabet.IntegerSymbol
(implements org.biojava.bio.symbol.
AtomicSymbol
, java.io.Serializable)
class org.biojava.bio.symbol.
RelabeledAlignment
(implements org.biojava.bio.symbol.
Alignment
)
class org.biojava.bio.symbol.
SymbolList.EmptySymbolList
(implements java.io.Serializable, org.biojava.bio.symbol.
SymbolList
)
Interface Hierarchy
interface org.biojava.utils.
Changeable
interface org.biojava.bio.symbol.
AlphabetIndex
interface org.biojava.bio.
Annotatable
interface org.biojava.bio.symbol.
Alphabet
interface org.biojava.bio.symbol.
FiniteAlphabet
interface org.biojava.bio.symbol.
Symbol
interface org.biojava.bio.symbol.
BasisSymbol
interface org.biojava.bio.symbol.
AtomicSymbol
interface org.biojava.bio.symbol.
SymbolList
interface org.biojava.bio.symbol.
Alignment
interface org.biojava.bio.symbol.
GappedSymbolList
interface org.biojava.bio.symbol.
FuzzyPointLocation.PointResolver
interface org.biojava.bio.symbol.
Location
interface org.biojava.bio.symbol.
Packing
interface java.io.Serializable
interface org.biojava.bio.symbol.
FuzzyLocation.RangeResolver
interface org.biojava.bio.symbol.
SymbolListFactory
interface org.biojava.bio.symbol.
SymbolPropertyTable
interface org.biojava.bio.symbol.
TranslationTable
interface org.biojava.bio.symbol.
ReversibleTranslationTable
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