Uses of Interface
org.biojava.bio.dp.WeightMatrix

Packages that use WeightMatrix
org.biojava.bio.dp HMM and Dynamic Programming Algorithms. 
 

Uses of WeightMatrix in org.biojava.bio.dp
 

Classes in org.biojava.bio.dp that implement WeightMatrix
 class SimpleWeightMatrix
           
 

Methods in org.biojava.bio.dp that return WeightMatrix
static WeightMatrix XmlMarkovModel.readMatrix(org.w3c.dom.Element root)
           
 

Methods in org.biojava.bio.dp with parameters of type WeightMatrix
static void XmlMarkovModel.writeMatrix(WeightMatrix matrix, java.io.PrintStream out)
           
static double DP.scoreWeightMatrix(WeightMatrix matrix, SymbolList symList, int start)
          Scores the SymbolList from symbol start to symbol (start+columns) with a weight matrix.
 

Constructors in org.biojava.bio.dp with parameters of type WeightMatrix
WeightMatrixAnnotator(WeightMatrix wm, double threshold)
           
WMAsMM(WeightMatrix wm)