org.biojava.bio.dist
Class XMLDistributionReader
java.lang.Object
org.xml.sax.helpers.DefaultHandler
org.biojava.bio.dist.XMLDistributionReader
- All Implemented Interfaces:
- ContentHandler, DTDHandler, EntityResolver, ErrorHandler
public class XMLDistributionReader
- extends DefaultHandler
A SAX parser that reads an XML representation of a
Distribution from a file and recreates it as a Distribution Object.
Handles OrderNDistributions and Simple Distributions but
ensure the OrderNDistributions being read in was made using
conditioning and conditioned Alphabets.
- Since:
- 1.3
- Author:
- Russell Smithies, Mark Schreiber, Matthew Pocock
Methods inherited from class org.xml.sax.helpers.DefaultHandler |
characters, endDocument, endElement, endPrefixMapping, error, fatalError, ignorableWhitespace, notationDecl, processingInstruction, resolveEntity, setDocumentLocator, skippedEntity, startDocument, startPrefixMapping, unparsedEntityDecl, warning |
Methods inherited from class java.lang.Object |
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait |
XMLDistributionReader
public XMLDistributionReader()
parseXML
public Distribution parseXML(InputStream is)
throws IOException,
SAXException
- Reads an XML representation of a Distribution from a file.
- Parameters:
is
- input in XML format
- Returns:
- dist the Distribution created.
- Throws:
IOException
- if an error occurs during reading.
SAXException
- if the XML is not as expected.
startElement
public void startElement(String nameSpaceURI,
String localName,
String rawName,
Attributes attributes)
throws SAXException
- Required by SAXParser to be public.
It is not reccomended that you use this method directly. Use ParseXML
instead.
- Specified by:
startElement
in interface ContentHandler
- Overrides:
startElement
in class DefaultHandler
- Throws:
SAXException