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Packages that use org.biojava.bio.structure | |
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org.biojava.bio.program.das.dasstructure | request a protein structure via DAS |
org.biojava.bio.structure | Interfaces and classes for protein structure (PDB). |
org.biojava.bio.structure.align | Classes for the super-imposition of structures. |
org.biojava.bio.structure.align.helper | Helper classes for structural alignment. |
org.biojava.bio.structure.align.pairwise | Classes for the pairwise alignment of structures. |
org.biojava.bio.structure.gui | A few convenience classes to view protein structures with Jmol (if it is on the classpath), to calculate a protein structure alignment and to investigate the internals of the protein structure alignment algorithm. |
org.biojava.bio.structure.gui.events | Some event classes for the protein structure GUIs. |
org.biojava.bio.structure.gui.util | Some utility classes for the protein structure GUIs. |
org.biojava.bio.structure.io | Input and Output of Structures |
org.biojava.bio.structure.io.mmcif | Input and Output of mmcif files |
org.biojava.bio.structure.server | classes for easier management of PDB installations |
Classes in org.biojava.bio.structure used by org.biojava.bio.program.das.dasstructure | |
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Structure
Interface for a structure object. |
Classes in org.biojava.bio.structure used by org.biojava.bio.structure | |
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AminoAcid
A Group that represents an AminoAcid. |
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Atom
A simple interface for an Atom. |
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Author
Describes author attributes for author information in a PDB file. |
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Chain
Defines the interface for a Chain. |
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Compound
Created by IntelliJ IDEA. |
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DBRef
A class to represent database cross references. |
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Group
This is the data structure for a single Group of atoms. |
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HetatomImpl
Generic Implementation of a Group interface. |
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JournalArticle
PDB-specific |
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PDBHeader
A class that contains PDB Header information. |
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PDBRecord
An interface implemented by all classes that represent PDB records |
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SSBond
A simple bean to store disulfid bridge information, the SSBOND records in the PDB files. |
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Structure
Interface for a structure object. |
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StructureException
An exception during the parsing of a PDB file. |
Classes in org.biojava.bio.structure used by org.biojava.bio.structure.align | |
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Atom
A simple interface for an Atom. |
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Structure
Interface for a structure object. |
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StructureException
An exception during the parsing of a PDB file. |
Classes in org.biojava.bio.structure used by org.biojava.bio.structure.align.helper | |
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Atom
A simple interface for an Atom. |
Classes in org.biojava.bio.structure used by org.biojava.bio.structure.align.pairwise | |
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Atom
A simple interface for an Atom. |
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Structure
Interface for a structure object. |
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StructureException
An exception during the parsing of a PDB file. |
Classes in org.biojava.bio.structure used by org.biojava.bio.structure.gui | |
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Structure
Interface for a structure object. |
Classes in org.biojava.bio.structure used by org.biojava.bio.structure.gui.events | |
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Structure
Interface for a structure object. |
Classes in org.biojava.bio.structure used by org.biojava.bio.structure.gui.util | |
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Chain
Defines the interface for a Chain. |
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Structure
Interface for a structure object. |
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StructureException
An exception during the parsing of a PDB file. |
Classes in org.biojava.bio.structure used by org.biojava.bio.structure.io | |
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Chain
Defines the interface for a Chain. |
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Group
This is the data structure for a single Group of atoms. |
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Structure
Interface for a structure object. |
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StructureException
An exception during the parsing of a PDB file. |
Classes in org.biojava.bio.structure used by org.biojava.bio.structure.io.mmcif | |
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Structure
Interface for a structure object. |
Classes in org.biojava.bio.structure used by org.biojava.bio.structure.server | |
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PDBHeader
A class that contains PDB Header information. |
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Structure
Interface for a structure object. |
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