org.biojava.bio.seq.io
Interface AlignmentFormat

All Known Implementing Classes:
FastaAlignmentFormat, MSFAlignmentFormat

public interface AlignmentFormat

Author:
Matthew Pocock, Samiul Hasan, Thomas Down, Keith James

Method Summary
 Alignment read(java.io.BufferedReader reader)
          Read in an alignment from a buffered reader object
 

Method Detail

read

Alignment read(java.io.BufferedReader reader)
Read in an alignment from a buffered reader object

Parameters:
reader - the reader from which to read in the alignment