Uses of Class
org.biojava.utils.ChangeSupport

Packages that use ChangeSupport
org.biojava.bio The core classes that will be used throughout the bio packages. 
org.biojava.bio.dist Probability distributions over Alphabets. 
org.biojava.bio.dp HMM and Dynamic Programming Algorithms. 
org.biojava.bio.gui.sequence Graphical displays of biological sequences and associated annotations. 
org.biojava.bio.program.das Development client for the Distributed Annotation System. 
org.biojava.bio.search Interfaces and classes for representing sequence similarity search results. 
org.biojava.bio.seq Classes and interfaces for defining biological sequences and informatics objects. 
org.biojava.bio.seq.db Collections of biological sequence data. 
org.biojava.bio.seq.distributed Sequences and SequenceDBs which are composed from data taken from a number of data sources. 
org.biojava.bio.seq.impl Standard in-memory implementations of Sequence and Feature
org.biojava.bio.symbol Representation of the Symbols that make up a sequence, and locations within them. 
org.biojava.bio.taxa Taxonomy object for representing species information. 
org.biojava.ontology A general-purpose API for ontologies. 
org.biojava.utils Miscellaneous utility classes used by other BioJava components. 
 

Uses of ChangeSupport in org.biojava.bio
 

Methods in org.biojava.bio that return ChangeSupport
protected  ChangeSupport OverlayAnnotation.getChangeSupport(ChangeType changeType)
           
protected  ChangeSupport MergeAnnotation.getChangeSupport(ChangeType changeType)
           
 

Constructors in org.biojava.bio with parameters of type ChangeSupport
Annotatable.AnnotationForwarder(java.lang.Object source, ChangeSupport cs)
          Deprecated. Create a new AnnotationForwarder that will forward events for a source using a change support.
MergeAnnotation.PropertyForwarder(java.lang.Object source, ChangeSupport cs)
          Create a new forwarder on behalf of a source using the change support.
OverlayAnnotation.PropertyForwarder(java.lang.Object source, ChangeSupport cs)
          Forward on behalf of source using the change support provided.
 

Uses of ChangeSupport in org.biojava.bio.dist
 

Methods in org.biojava.bio.dist that return ChangeSupport
protected  ChangeSupport AbstractDistribution.getChangeSupport(ChangeType ct)
           
protected  ChangeSupport TranslatedDistribution.getChangeSupport(ChangeType ct)
           
protected  ChangeSupport AbstractOrderNDistribution.getChangeSupport(ChangeType ct)
           
 

Constructors in org.biojava.bio.dist with parameters of type ChangeSupport
Distribution.NullModelForwarder(java.lang.Object source, ChangeSupport cs)
          Deprecated. Create a new forwarder.
 

Uses of ChangeSupport in org.biojava.bio.dp
 

Methods in org.biojava.bio.dp that return ChangeSupport
protected  ChangeSupport SimpleMarkovModel.getChangeSupport(ChangeType ct)
           
protected  ChangeSupport SimpleEmissionState.getChangeSupport(ChangeType ct)
           
 

Uses of ChangeSupport in org.biojava.bio.gui.sequence
 

Methods in org.biojava.bio.gui.sequence that return ChangeSupport
protected  ChangeSupport LabelledSequenceRenderer.generateChangeSupport()
           
protected  ChangeSupport SequenceRendererWrapper.getChangeSupport(ChangeType ct)
           
protected  ChangeSupport MultiLineRenderer.getChangeSupport(ChangeType ct)
           
protected  ChangeSupport SequencePanel.getChangeSupport(ChangeType ct)
           
protected  ChangeSupport PaddingRenderer.getChangeSupport(ChangeType ct)
           
protected  ChangeSupport FilteringRenderer.getChangeSupport(ChangeType ct)
           
protected  ChangeSupport PairwiseSequencePanel.getChangeSupport(ChangeType ct)
          getChangeSupport lazily instantiates a helper for change listeners.
protected  ChangeSupport PairwiseOverlayRenderer.getChangeSupport(ChangeType ct)
           
protected  ChangeSupport FeatureBlockSequenceRenderer.getChangeSupport(ChangeType ct)
           
protected  ChangeSupport SequencePoster.getChangeSupport(ChangeType ct)
          Deprecated.  
protected  ChangeSupport TranslatedSequencePanel.getChangeSupport(ChangeType ct)
          getChangeSupport lazily instantiates a helper for change listeners.
protected  ChangeSupport OverlayRendererWrapper.getChangeSupport(ChangeType ct)
           
protected  ChangeSupport BumpedRenderer.getChangeSupport(ChangeType ct)
           
protected  ChangeSupport PairwiseFilteringRenderer.getChangeSupport(ChangeType ct)
           
 

Constructors in org.biojava.bio.gui.sequence with parameters of type ChangeSupport
PairwiseSequenceRenderer.PairwiseRendererForwarder(PairwiseSequenceRenderer source, ChangeSupport cs)
          Creates a new PairwiseRendererForwarder.
SequenceRenderer.RendererForwarder(SequenceRenderer source, ChangeSupport cs)
           
 

Uses of ChangeSupport in org.biojava.bio.program.das
 

Methods in org.biojava.bio.program.das that return ChangeSupport
protected  ChangeSupport ReferenceServer.getChangeSupport(ChangeType ct)
           
protected  ChangeSupport DASSequence.getChangeSupport(ChangeType ct)
           
 

Uses of ChangeSupport in org.biojava.bio.search
 

Methods in org.biojava.bio.search that return ChangeSupport
protected  ChangeSupport SequenceDBSearchHit.getChangeSupport(ChangeType ct)
          Deprecated.  
protected  ChangeSupport SimpleSeqSimilaritySearchSubHit.getChangeSupport(ChangeType ct)
           
protected  ChangeSupport SequenceDBSearchResult.getChangeSupport(ChangeType ct)
          Deprecated.  
protected  ChangeSupport SimpleSeqSimilaritySearchResult.getChangeSupport(ChangeType ct)
           
protected  ChangeSupport SequenceDBSearchSubHit.getChangeSupport(ChangeType ct)
          Deprecated.  
protected  ChangeSupport SimpleSeqSimilaritySearchHit.getChangeSupport(ChangeType ct)
           
 

Uses of ChangeSupport in org.biojava.bio.seq
 

Methods in org.biojava.bio.seq that return ChangeSupport
protected  ChangeSupport SimpleAssembly.getChangeSupport(ChangeType ct)
           
protected  ChangeSupport NewSimpleAssembly.getChangeSupport(ChangeType ct)
           
protected  ChangeSupport FeatureTypes.RepositoryImpl.getChangeSupport(ChangeType ct)
           
protected  ChangeSupport LazyFeatureHolder.getChangeSupport(ChangeType ct)
           
 

Uses of ChangeSupport in org.biojava.bio.seq.db
 

Methods in org.biojava.bio.seq.db that return ChangeSupport
protected  ChangeSupport SequenceDBWrapper.getChangeSupport(ChangeType ct)
           
 

Constructors in org.biojava.bio.seq.db with parameters of type ChangeSupport
SequenceDBWrapper.SequencesForwarder(java.lang.Object source, ChangeSupport cs)
           
 

Uses of ChangeSupport in org.biojava.bio.seq.distributed
 

Methods in org.biojava.bio.seq.distributed that return ChangeSupport
protected  ChangeSupport DistributedSequenceDB.getChangeSupport()
           
 

Uses of ChangeSupport in org.biojava.bio.seq.impl
 

Methods in org.biojava.bio.seq.impl that return ChangeSupport
protected  ChangeSupport LazyFilterFeatureHolder.getChangeSupport()
           
protected  ChangeSupport SimpleSequence.getChangeSupport(ChangeType ct)
           
protected  ChangeSupport SimpleFeature.getChangeSupport(ChangeType ct)
           
 

Uses of ChangeSupport in org.biojava.bio.symbol
 

Methods in org.biojava.bio.symbol that return ChangeSupport
protected  ChangeSupport AbstractSymbol.getChangeSupport(ChangeType changeType)
           
protected  ChangeSupport SimpleAlphabet.getChangeSupport(ChangeType ct)
           
 

Constructors in org.biojava.bio.symbol with parameters of type ChangeSupport
AbstractSymbolList.EditScreener(java.lang.Object source, ChangeSupport cs, int min, int max)
           
AbstractSymbolList.EditTranslater(java.lang.Object source, ChangeSupport cs, int min, int max)
           
 

Uses of ChangeSupport in org.biojava.bio.taxa
 

Methods in org.biojava.bio.taxa that return ChangeSupport
protected  ChangeSupport AbstractTaxon.getChangeSupport(ChangeType ct)
          Deprecated.  
 

Uses of ChangeSupport in org.biojava.ontology
 

Methods in org.biojava.ontology that return ChangeSupport
 ChangeSupport AbstractTerm.getChangeSupport(ChangeType ct)
           
 ChangeSupport OntologyTerm.Impl.getChangeSupport(ChangeType ct)
           
 

Uses of ChangeSupport in org.biojava.utils
 

Methods in org.biojava.utils that return ChangeSupport
 ChangeSupport ChangeForwarder.changeSupport()
          Return the underlying ChangeSupport instance that can be used to fire ChangeEvents and mannage listeners.
protected  ChangeSupport AbstractChangeable.generateChangeSupport()
          Called the first time a ChangeSupport object is needed.
protected  ChangeSupport AbstractChangeable.getChangeSupport(ChangeType ct)
          Called to retrieve the ChangeSupport for this object.
 

Constructors in org.biojava.utils with parameters of type ChangeSupport
ChangeForwarder.Retyper(java.lang.Object source, ChangeSupport changeSupport, ChangeType type)
          Create a new Retyper for forwarding events.
ChangeForwarder(java.lang.Object source, ChangeSupport changeSupport)
          Create a new ChangeForwarder for forwarding events.