Uses of Class
org.biojava.bio.alignment.SequenceAlignment

Packages that use SequenceAlignment
org.biojava.bio.alignment Classes to generate and describe sequence alignments. 
 

Uses of SequenceAlignment in org.biojava.bio.alignment
 

Subclasses of SequenceAlignment in org.biojava.bio.alignment
 class NeedlemanWunsch
          Needleman and Wunsch definied the problem of global sequence alignments, from the first till the last symbol of a sequence.
 class SmithWaterman
          Smith and Waterman developed an efficient dynamic programing algorithm to perform local sequence alignments, which returns the most conserved region of two sequences (longes common substring with modifications).