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public interface UnigeneCluster
A single unigene cluster.
This represents all of the information available about a single unigene cluster. This includes the sequences that are in it, the unique sequence that is its representative, the cluster id and all the annotation available via the data file. Much of the annotation may be accessible via the getAnnotation() method.
There is much more information in the Unigene clusters than just the id,
title and sequences. This is all stoored in the annotation associated with
the cluster. The annotation bundle conforms to the schema in
UnigeneTools.UNIGENE_ANNOTATION
.
Nested Class Summary |
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Nested classes/interfaces inherited from interface org.biojava.bio.Annotatable |
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Annotatable.AnnotationForwarder |
Field Summary |
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Fields inherited from interface org.biojava.bio.Annotatable |
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ANNOTATION |
Method Summary | |
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SequenceDB |
getAll()
All sequences that map to this cluster. |
java.lang.String |
getID()
The public unigene ID. |
java.lang.String |
getTitle()
The cluster title. |
Sequence |
getUnique()
The unique sequence that is used as a representative for this cluster. |
Methods inherited from interface org.biojava.bio.Annotatable |
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getAnnotation |
Methods inherited from interface org.biojava.utils.Changeable |
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addChangeListener, addChangeListener, isUnchanging, removeChangeListener, removeChangeListener |
Method Detail |
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java.lang.String getID()
java.lang.String getTitle()
SequenceDB getAll()
Sequence getUnique()
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