org.biojava.bio.seq.io.agave
Class AGAVEMapLocation

java.lang.Object
  extended by org.biojava.bio.seq.io.agave.AGAVEMapLocation

public class AGAVEMapLocation
extends java.lang.Object

Author:
Hanning Ni Doubletwist Inc, Greg Cox

Constructor Summary
AGAVEMapLocation()
           
 
Method Summary
 void addPosition(AGAVEMapPosition pos)
           
 java.lang.String getChromosome()
           
 java.lang.String getMapType()
           
 java.lang.String getOrientation()
           
 AGAVEMapPosition getPosition1()
           
 AGAVEMapPosition getPosition2()
           
 java.lang.String getSource()
           
 java.lang.String getSubSeqStart()
           
 java.lang.String getUnits()
           
 void setChromosome(java.lang.String value)
           
 void setMapType(java.lang.String value)
           
 void setOrientation(java.lang.String value)
           
 void setSource(java.lang.String value)
           
 void setSubSeqStart(java.lang.String value)
           
 void setUnits(java.lang.String value)
           
 java.lang.String toString()
           
 java.lang.String toString(java.lang.String indent, java.lang.String indent_unit)
           
 
Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait
 

Constructor Detail

AGAVEMapLocation

public AGAVEMapLocation()
Method Detail

addPosition

public void addPosition(AGAVEMapPosition pos)

getPosition1

public AGAVEMapPosition getPosition1()

getPosition2

public AGAVEMapPosition getPosition2()

setMapType

public void setMapType(java.lang.String value)

getMapType

public java.lang.String getMapType()

setUnits

public void setUnits(java.lang.String value)

getUnits

public java.lang.String getUnits()

setSource

public void setSource(java.lang.String value)

getSource

public java.lang.String getSource()

setChromosome

public void setChromosome(java.lang.String value)

getChromosome

public java.lang.String getChromosome()

setSubSeqStart

public void setSubSeqStart(java.lang.String value)

getSubSeqStart

public java.lang.String getSubSeqStart()

setOrientation

public void setOrientation(java.lang.String value)

getOrientation

public java.lang.String getOrientation()

toString

public java.lang.String toString(java.lang.String indent,
                                 java.lang.String indent_unit)

toString

public java.lang.String toString()
Overrides:
toString in class java.lang.Object