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public interface SequenceDB
A database of sequences with accessible keys and iterators over all sequences.
This may have several implementations with rich behaviour, but basically most of the time you will just use the interface methods to do stuff. A sequence database contains a finite number of sequences stored under unique keys.
Field Summary |
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Fields inherited from interface org.biojava.bio.seq.db.SequenceDBLite |
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SEQUENCES |
Method Summary | |
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FeatureHolder |
filter(FeatureFilter filter)
Query features attached to all sequences in this database. |
java.util.Set |
ids()
Get an immutable set of all of the IDs in the database. |
SequenceIterator |
sequenceIterator()
Returns a SequenceIterator over all sequences in the database. |
Methods inherited from interface org.biojava.bio.seq.db.SequenceDBLite |
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addSequence, getName, getSequence, removeSequence |
Methods inherited from interface org.biojava.utils.Changeable |
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addChangeListener, addChangeListener, isUnchanging, removeChangeListener, removeChangeListener |
Method Detail |
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java.util.Set ids()
SequenceIterator sequenceIterator()
FeatureHolder filter(FeatureFilter filter)
filter
to all
sequences then merging the results.
filter
- a FeatureFilter
.
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