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public interface OrthoPairSet
represents the Homologene Group.
Nested Class Summary | |
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static interface |
OrthoPairSet.Iterator
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Field Summary | |
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static ChangeType |
MODIFY
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Method Summary | |
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void |
addOrthoPair(OrthoPair orthology)
adds a specified OrthoPair relationship to this group. |
OrthoPairSet |
filter(OrthoPairFilter filter)
filter an OrthoPairSet |
double |
getMinIdentity()
get the lowest level of identity observed in this Group |
java.lang.String |
getName()
retrieves name of this group. |
java.util.Set |
getTaxa()
get the taxa represented in this group |
OrthoPairSet.Iterator |
iterator()
returns an iterator to the members of this set |
void |
removeOrthoPair(OrthoPair orthology)
removes a specified OrthoPair relationship from this group. |
void |
setName(java.lang.String name)
set the name of this group. |
int |
size()
returns an iterator to the contents of the set. |
Field Detail |
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static final ChangeType MODIFY
Method Detail |
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java.lang.String getName()
void setName(java.lang.String name)
void addOrthoPair(OrthoPair orthology) throws ChangeVetoException
ChangeVetoException
void removeOrthoPair(OrthoPair orthology) throws ChangeVetoException
ChangeVetoException
int size()
OrthoPairSet.Iterator iterator()
java.util.Set getTaxa()
double getMinIdentity()
OrthoPairSet filter(OrthoPairFilter filter)
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