org.biojava.bio.program.das.dasalignment
Class DASAlignmentXMLResponseParser
java.lang.Object
org.xml.sax.helpers.DefaultHandler
org.biojava.bio.program.das.dasalignment.DASAlignmentXMLResponseParser
- All Implemented Interfaces:
- org.xml.sax.ContentHandler, org.xml.sax.DTDHandler, org.xml.sax.EntityResolver, org.xml.sax.ErrorHandler
public class DASAlignmentXMLResponseParser
- extends org.xml.sax.helpers.DefaultHandler
A class to Parse the XML response of a DAS Alignment service.
returns an Alignment object.
- Since:
- 1.4
- Author:
- Andreas Prlic
Methods inherited from class org.xml.sax.helpers.DefaultHandler |
endPrefixMapping, error, fatalError, ignorableWhitespace, notationDecl, processingInstruction, resolveEntity, setDocumentLocator, skippedEntity, startPrefixMapping, unparsedEntityDecl, warning |
Methods inherited from class java.lang.Object |
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait |
DASAlignmentXMLResponseParser
public DASAlignmentXMLResponseParser()
getAlignments
public Alignment[] getAlignments()
- Returns the alignments.
- Returns:
- an array of Alignment objects
getAlignment
public Alignment getAlignment(int position)
- Returns Alignment at position ...
- Parameters:
position
- an int
- Returns:
- an Alignment object
startElement
public void startElement(java.lang.String uri,
java.lang.String name,
java.lang.String qName,
org.xml.sax.Attributes atts)
- Specified by:
startElement
in interface org.xml.sax.ContentHandler
- Overrides:
startElement
in class org.xml.sax.helpers.DefaultHandler
endElement
public void endElement(java.lang.String uri,
java.lang.String name,
java.lang.String qName)
- Specified by:
endElement
in interface org.xml.sax.ContentHandler
- Overrides:
endElement
in class org.xml.sax.helpers.DefaultHandler
startDocument
public void startDocument()
- Specified by:
startDocument
in interface org.xml.sax.ContentHandler
- Overrides:
startDocument
in class org.xml.sax.helpers.DefaultHandler
endDocument
public void endDocument()
- Specified by:
endDocument
in interface org.xml.sax.ContentHandler
- Overrides:
endDocument
in class org.xml.sax.helpers.DefaultHandler
characters
public void characters(char[] ch,
int start,
int length)
- Specified by:
characters
in interface org.xml.sax.ContentHandler
- Overrides:
characters
in class org.xml.sax.helpers.DefaultHandler