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java.lang.Objectorg.biojava.bio.program.das.dasalignment.DASAlignmentClient
public class DASAlignmentClient
A DAS client that connects to a DAS aligmnent service and returns a Biojava Alignment object.
Constructor Summary | |
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DASAlignmentClient()
Constructs a DASAlignmentClient object. |
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DASAlignmentClient(java.lang.String url)
Constructs a DASAlignmentClient object. |
Method Summary | |
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Alignment[] |
getAlignments()
Returns the alignments. |
Alignment[] |
getAlignments(java.lang.String query_)
Returns the alignments. |
java.lang.String |
getQuery()
Returns the query. |
void |
setQuery(java.lang.String q)
Specifies the query. |
Methods inherited from class java.lang.Object |
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clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait |
Constructor Detail |
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public DASAlignmentClient()
public DASAlignmentClient(java.lang.String url)
url
- a String ...Method Detail |
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public void setQuery(java.lang.String q)
q
- a String specifying the query valuegetQuery()
public java.lang.String getQuery()
setQuery(java.lang.String)
public Alignment[] getAlignments(java.lang.String query_) throws java.io.IOException
query_
- a String
java.io.IOException
- ...public Alignment[] getAlignments() throws java.io.IOException
java.io.IOException
- ...
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