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java.lang.Objectorg.biojavax.bio.seq.RichSequence.Terms
org.biojavax.bio.seq.io.UniProtXMLFormat.Terms
public static class UniProtXMLFormat.Terms
Implements some UniProtXML-specific terms.
Field Summary | |
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static java.lang.String |
ABBREV_NAME_KEY
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static java.lang.String |
COMMON_NAME_KEY
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static java.lang.String |
CONTAINS_PREFIX
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static java.lang.String |
FULL_NAME_KEY
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static java.lang.String |
GENENAME_KEY
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static java.lang.String |
GENESYNONYM_KEY
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static java.lang.String |
INCLUDES_PREFIX
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static java.lang.String |
LOC_FUZZY_END_KEY
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static java.lang.String |
LOC_FUZZY_START_KEY
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static java.lang.String |
NCBI_TAXON_KEY
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static java.lang.String |
ORDLOCNAME_KEY
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static java.lang.String |
ORFNAME_KEY
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static java.lang.String |
SCIENTIFIC_NAME_KEY
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static java.lang.String |
SYNONYM_NAME_KEY
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Fields inherited from class org.biojavax.bio.seq.RichSequence.Terms |
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DOI_KEY, MEDLINE_KEY, PLASMID_KEY, PUBMED_KEY, SPECIES_KEY, STRAIN_KEY, TISSUE_KEY, TRANSPOSON_KEY |
Constructor Summary | |
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UniProtXMLFormat.Terms()
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Method Summary | |
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static ComparableTerm |
getEvidenceAttrTerm()
Getter for the evidence attr term |
static ComparableTerm |
getEvidenceCategoryTerm()
Getter for the evidence category term |
static ComparableTerm |
getEvidenceDateTerm()
Getter for the evidence date term |
static ComparableTerm |
getEvidenceTypeTerm()
Getter for the evidence type term |
static ComparableTerm |
getFeatureOriginalTerm()
Getter for the feature original term |
static ComparableTerm |
getFeatureRefTerm()
Getter for the feature ref term |
static ComparableTerm |
getFeatureStatusTerm()
Getter for the feature status term |
static ComparableTerm |
getFeatureVariationTerm()
Getter for the feature variation term |
static ComparableTerm |
getLocationSequenceTerm()
Getter for the location seq term |
static ComparableTerm |
getProteinTypeTerm()
Getter for the protein type term |
static ComparableOntology |
getUniprotKWOnto()
Getter for the private uniprot ontology. |
static ComparableTerm |
getUniProtXMLTerm()
Getter for the UniProtXML term |
Methods inherited from class java.lang.Object |
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clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait |
Field Detail |
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public static final java.lang.String CONTAINS_PREFIX
public static final java.lang.String INCLUDES_PREFIX
public static final java.lang.String GENENAME_KEY
public static final java.lang.String GENESYNONYM_KEY
public static final java.lang.String ORDLOCNAME_KEY
public static final java.lang.String ORFNAME_KEY
public static final java.lang.String NCBI_TAXON_KEY
public static final java.lang.String COMMON_NAME_KEY
public static final java.lang.String FULL_NAME_KEY
public static final java.lang.String SCIENTIFIC_NAME_KEY
public static final java.lang.String SYNONYM_NAME_KEY
public static final java.lang.String ABBREV_NAME_KEY
public static final java.lang.String LOC_FUZZY_START_KEY
public static final java.lang.String LOC_FUZZY_END_KEY
Constructor Detail |
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public UniProtXMLFormat.Terms()
Method Detail |
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public static ComparableOntology getUniprotKWOnto()
public static ComparableTerm getUniProtXMLTerm()
public static ComparableTerm getProteinTypeTerm()
public static ComparableTerm getEvidenceCategoryTerm()
public static ComparableTerm getEvidenceTypeTerm()
public static ComparableTerm getEvidenceDateTerm()
public static ComparableTerm getEvidenceAttrTerm()
public static ComparableTerm getFeatureRefTerm()
public static ComparableTerm getFeatureStatusTerm()
public static ComparableTerm getFeatureOriginalTerm()
public static ComparableTerm getFeatureVariationTerm()
public static ComparableTerm getLocationSequenceTerm()
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