Uses of Class
org.biojava.directory.RegistryException

Packages that use RegistryException
org.biojava.bio.program.das Development client for the Distributed Annotation System. 
org.biojava.bio.seq.db.biofetch Client for the OBDA BioFetch protocol. 
org.biojava.bio.seq.db.biosql General purpose Sequence storage in a relational database. 
org.biojava.bio.seq.db.flat Support for OBDA flatfile databases. 
org.biojava.directory Open Bio Sequence Database Access (OBDA) registry support. 
 

Uses of RegistryException in org.biojava.bio.program.das
 

Methods in org.biojava.bio.program.das that throw RegistryException
 SequenceDBLite DASSequenceDBProvider.getSequenceDB(java.util.Map config)
           
 

Uses of RegistryException in org.biojava.bio.seq.db.biofetch
 

Methods in org.biojava.bio.seq.db.biofetch that throw RegistryException
 SequenceDBLite BioFetchSequenceDBProvider.getSequenceDB(java.util.Map config)
           
 

Uses of RegistryException in org.biojava.bio.seq.db.biosql
 

Methods in org.biojava.bio.seq.db.biosql that throw RegistryException
 SequenceDBLite BioSQLSequenceDBProvider.getSequenceDB(java.util.Map config)
          Deprecated.  
 

Uses of RegistryException in org.biojava.bio.seq.db.flat
 

Methods in org.biojava.bio.seq.db.flat that throw RegistryException
 SequenceDBLite FlatSequenceDBProvider.getSequenceDB(java.util.Map config)
           
 

Uses of RegistryException in org.biojava.directory
 

Subclasses of RegistryException in org.biojava.directory
 class ProviderNotFoundException
          ProviderNotFoundException is thrown when a sequence database provider can not be located.
 

Methods in org.biojava.directory that throw RegistryException
 void RegistryConfiguration.Composite.addBottomConfig(RegistryConfiguration newConfig)
          Add a configuration as the most default place to look.
 void RegistryConfiguration.Composite.addTopConfig(RegistryConfiguration newConfig)
          Add a configuration as the most authoritative place to look.
 java.util.Map RegistryConfiguration.getConfiguration()
          getConfiguration returns a mapping of registry database names to collections of tag-value pairs.
 SequenceDBLite Registry.getDatabase(java.lang.String dbName)
          getDatabase retrieves a database instance known by a name String.
 SequenceDBLite SequenceDBProvider.getSequenceDB(java.util.Map config)
          Get a sequence database.
static RegistryConfiguration OBDARegistryParser.parseRegistry(java.io.BufferedReader in, java.lang.String locator)
          parseRegistry parses an Open Bioinformatics Database Access (OBDA) configuration file.