Uses of Interface
org.biojava.bio.program.homologene.SimilarityType

Packages that use SimilarityType
org.biojava.bio.program.homologene Support classes for Homologene data. 
 

Uses of SimilarityType in org.biojava.bio.program.homologene
 

Classes in org.biojava.bio.program.homologene that implement SimilarityType
static class SimilarityType.PlaceHolder
           
 

Fields in org.biojava.bio.program.homologene declared as SimilarityType
static SimilarityType SimilarityType.CURATED
           
static SimilarityType SimilarityType.MULTIPLE
           
static SimilarityType SimilarityType.TWIN
           
 

Methods in org.biojava.bio.program.homologene that return SimilarityType
 SimilarityType OrthoPair.getSimilarity()
          gets the second orthologue in the orthology relationship.
 SimilarityType SimpleOrthoPair.getSimilarity()
           
 

Methods in org.biojava.bio.program.homologene with parameters of type SimilarityType
 OrthoPair SimpleHomologeneDB.createOrthoPair(Orthologue first, Orthologue second, SimilarityType type, double percentIdentity)
           
 OrthoPair HomologeneDB.createOrthoPair(Orthologue first, Orthologue second, SimilarityType type, double percentIdentity)
          Create a computed orthology entry.
 

Constructors in org.biojava.bio.program.homologene with parameters of type SimilarityType
OrthoPairFilter.BySimilarityType(SimilarityType type)
           
SimpleOrthoPair(Orthologue first, Orthologue second, SimilarityType type, double percentIdentity)
          constructor for the computed form of an orthology relationship.