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Packages that use Chain | |
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org.biojava.bio.structure | Interfaces and classes for protein structure (PDB). |
Uses of Chain in org.biojava.bio.structure |
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Classes in org.biojava.bio.structure that implement Chain | |
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class |
ChainImpl
A Chain in a PDB file. |
Methods in org.biojava.bio.structure that return Chain | |
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Chain |
StructureImpl.findChain(java.lang.String chainId)
|
Chain |
Structure.findChain(java.lang.String chainId)
request a particular chain from a structure. |
Chain |
StructureImpl.findChain(java.lang.String chainId,
int modelnr)
|
Chain |
Structure.findChain(java.lang.String chainId,
int modelnr)
request a particular chain from a particular model |
Chain |
StructureImpl.getChain(int number)
retrieve a chain by it's position within the Structure. |
Chain |
Structure.getChain(int pos)
retrieve a chain by it's position within the Structure . |
Chain |
StructureImpl.getChain(int modelnr,
int number)
retrieve a chain by it's position within the Structure and model number. |
Chain |
Structure.getChain(int pos,
int modelnr)
retrieve a chain by it's position within the Structure and model number. |
Chain |
StructureImpl.getChainByPDB(java.lang.String chainId)
|
Chain |
Structure.getChainByPDB(java.lang.String chainId)
request a chain by it's PDB code by default takes only the first model |
Chain |
StructureImpl.getChainByPDB(java.lang.String chainId,
int modelnr)
|
Chain |
Structure.getChainByPDB(java.lang.String chainId,
int modelnr)
request a chain by it's PDB code by default takes only the first model |
Chain |
GroupIterator.getCurrentChain()
|
Chain |
HetatomImpl.getParent()
Returns the parent Chain of the Group |
Chain |
Group.getParent()
Returns the parent Chain of the Group |
Methods in org.biojava.bio.structure with parameters of type Chain | |
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void |
StructureImpl.addChain(Chain chain)
add a new chain. |
void |
Structure.addChain(Chain chain)
add a new chain. |
void |
StructureImpl.addChain(Chain chain,
int modelnr)
add a new chain, if several models are available. |
void |
Structure.addChain(Chain chain,
int modelnr)
add a new chain, if several models are available. |
void |
HetatomImpl.setParent(Chain parent)
Set the back-reference (to its parent Chain) |
void |
Group.setParent(Chain parent)
Set the back-reference (to its parent Chain) |
Constructors in org.biojava.bio.structure with parameters of type Chain | |
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StructureImpl(Chain c)
construct a Structure object that contains a particular chain |
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