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java.lang.Objectorg.xml.sax.helpers.DefaultHandler
org.biojava.bio.dist.XMLDistributionReader
public class XMLDistributionReader
A SAX parser that reads an XML representation of a Distribution from a file and recreates it as a Distribution Object. Handles OrderNDistributions and Simple Distributions but ensure the OrderNDistributions being read in was made using conditioning and conditioned Alphabets.
Constructor Summary | |
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XMLDistributionReader()
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Method Summary | |
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Distribution |
parseXML(java.io.InputStream is)
Reads an XML representation of a Distribution from a file. |
void |
startElement(java.lang.String nameSpaceURI,
java.lang.String localName,
java.lang.String rawName,
org.xml.sax.Attributes attributes)
Required by SAXParser to be public. |
Methods inherited from class org.xml.sax.helpers.DefaultHandler |
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characters, endDocument, endElement, endPrefixMapping, error, fatalError, ignorableWhitespace, notationDecl, processingInstruction, resolveEntity, setDocumentLocator, skippedEntity, startDocument, startPrefixMapping, unparsedEntityDecl, warning |
Methods inherited from class java.lang.Object |
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clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait |
Constructor Detail |
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public XMLDistributionReader()
Method Detail |
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public Distribution parseXML(java.io.InputStream is) throws java.io.IOException, org.xml.sax.SAXException
is
- input in XML format
java.io.IOException
- if an error occurs during reading.
org.xml.sax.SAXException
- if the XML is not as expected.public void startElement(java.lang.String nameSpaceURI, java.lang.String localName, java.lang.String rawName, org.xml.sax.Attributes attributes) throws org.xml.sax.SAXException
It is not reccomended that you use this method directly. Use ParseXML instead.
startElement
in interface org.xml.sax.ContentHandler
startElement
in class org.xml.sax.helpers.DefaultHandler
org.xml.sax.SAXException
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