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Packages that use GappedSymbolList | |
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org.biojava.bio.alignment | Classes to generate and describe sequence alignments. |
org.biojava.bio.seq | Classes and interfaces for defining biological sequences and informatics objects. |
org.biojava.bio.seq.impl | Standard in-memory implementations of Sequence and
Feature . |
org.biojava.bio.symbol | Representation of the Symbols that make up a sequence, and locations within them. |
Uses of GappedSymbolList in org.biojava.bio.alignment |
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Methods in org.biojava.bio.alignment with parameters of type GappedSymbolList | |
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void |
FlexibleAlignment.removeGaps(GappedSymbolList seq,
int start,
int length)
because there is a bug in GappedSymbolList |
Uses of GappedSymbolList in org.biojava.bio.seq |
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Subinterfaces of GappedSymbolList in org.biojava.bio.seq | |
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interface |
GappedSequence
Extension of GappedSymbolList which also projects features into the gapped coordinate system. |
Uses of GappedSymbolList in org.biojava.bio.seq.impl |
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Classes in org.biojava.bio.seq.impl that implement GappedSymbolList | |
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class |
SimpleGappedSequence
Simple implementation of GappedSequence. |
Uses of GappedSymbolList in org.biojava.bio.symbol |
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Classes in org.biojava.bio.symbol that implement GappedSymbolList | |
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class |
SimpleGappedSymbolList
This implementation of GappedSymbolList wraps a SymbolList, allowing you to insert gaps. |
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