Uses of Interface
org.biojava.bio.structure.Chain

Packages that use Chain
org.biojava.bio.structure Interfaces and classes for protein structure (PDB). 
 

Uses of Chain in org.biojava.bio.structure
 

Classes in org.biojava.bio.structure that implement Chain
 class ChainImpl
          A Chain in a PDB file.
 

Methods in org.biojava.bio.structure that return Chain
 Chain StructureImpl.findChain(java.lang.String chainId)
           
 Chain Structure.findChain(java.lang.String chainId)
          request a particular chain from a structure.
 Chain StructureImpl.findChain(java.lang.String chainId, int modelnr)
           
 Chain Structure.findChain(java.lang.String chainId, int modelnr)
          request a particular chain from a particular model
 Chain StructureImpl.getChain(int number)
          retrieve a chain by it's position within the Structure.
 Chain Structure.getChain(int pos)
          retrieve a chain by it's position within the Structure .
 Chain StructureImpl.getChain(int modelnr, int number)
          retrieve a chain by it's position within the Structure and model number.
 Chain Structure.getChain(int pos, int modelnr)
          retrieve a chain by it's position within the Structure and model number.
 Chain StructureImpl.getChainByPDB(java.lang.String chainId)
           
 Chain Structure.getChainByPDB(java.lang.String chainId)
          request a chain by it's PDB code by default takes only the first model
 Chain StructureImpl.getChainByPDB(java.lang.String chainId, int modelnr)
           
 Chain Structure.getChainByPDB(java.lang.String chainId, int modelnr)
          request a chain by it's PDB code by default takes only the first model
 Chain GroupIterator.getCurrentChain()
           
 Chain HetatomImpl.getParent()
          Returns the parent Chain of the Group
 Chain Group.getParent()
          Returns the parent Chain of the Group
 

Methods in org.biojava.bio.structure with parameters of type Chain
 void StructureImpl.addChain(Chain chain)
          add a new chain.
 void Structure.addChain(Chain chain)
          add a new chain.
 void StructureImpl.addChain(Chain chain, int modelnr)
          add a new chain, if several models are available.
 void Structure.addChain(Chain chain, int modelnr)
          add a new chain, if several models are available.
 void HetatomImpl.setParent(Chain parent)
          Set the back-reference (to its parent Chain)
 void Group.setParent(Chain parent)
          Set the back-reference (to its parent Chain)
 

Constructors in org.biojava.bio.structure with parameters of type Chain
StructureImpl(Chain c)
          construct a Structure object that contains a particular chain