org.biojava.bio.seq.io.agave
Class AGAVEChromosomeHandler
java.lang.Object
org.biojava.bio.seq.io.agave.StAXContentHandlerBase
org.biojava.bio.seq.io.agave.StAXFeatureHandler
org.biojava.bio.seq.io.agave.AGAVEChromosomeHandler
- All Implemented Interfaces:
- AGAVEChromosomeCallbackItf, SequenceHandler, StAXContentHandler
public class AGAVEChromosomeHandler
- extends StAXFeatureHandler
- implements AGAVEChromosomeCallbackItf, SequenceHandler
Handles the AGAVE <chromosome> element
- Author:
- Hanning Ni Doubletwist Inc
Methods inherited from class org.biojava.bio.seq.io.agave.StAXFeatureHandler |
addFeatureToSequence, addHandler, createTemplate, endElement, getFeatureListener, getHandlerStackIterator, getLevel, pop, push, realizeSubFeatures, setFeatureListener, setHandlerCharacteristics, setProperty, startElement |
Methods inherited from class java.lang.Object |
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait |
AGAVE_CHROMOSOME_HANDLER_FACTORY
public static final StAXHandlerFactory AGAVE_CHROMOSOME_HANDLER_FACTORY
reportSequence
public void reportSequence(Sequence sequence)
- Specified by:
reportSequence
in interface AGAVEChromosomeCallbackItf
getSequences
public java.util.Iterator getSequences()
startElementHandler
public void startElementHandler(java.lang.String nsURI,
java.lang.String localName,
java.lang.String qName,
org.xml.sax.Attributes attrs)
throws org.xml.sax.SAXException
- Description copied from class:
StAXFeatureHandler
- Element-specific handler.
Subclass this to do something useful!
- Overrides:
startElementHandler
in class StAXFeatureHandler
- Throws:
org.xml.sax.SAXException
endElementHandler
public void endElementHandler(java.lang.String nsURI,
java.lang.String localName,
java.lang.String qName,
StAXContentHandler handler)
throws org.xml.sax.SAXException
- Description copied from class:
StAXFeatureHandler
- Element specific exit handler
Subclass to do anything useful.
- Overrides:
endElementHandler
in class StAXFeatureHandler
- Throws:
org.xml.sax.SAXException