Uses of Class
org.biojava.bio.chromatogram.graphic.ChromatogramGraphic.Option

Packages that use ChromatogramGraphic.Option
org.biojava.bio.chromatogram.graphic Tools for displaying chromatograms. 
 

Uses of ChromatogramGraphic.Option in org.biojava.bio.chromatogram.graphic
 

Fields in org.biojava.bio.chromatogram.graphic declared as ChromatogramGraphic.Option
static ChromatogramGraphic.Option ChromatogramGraphic.Option.DRAW_CALL_A
          Option indicating whether to fill in the callboxes for calls of nucleotide A.
static ChromatogramGraphic.Option ChromatogramGraphic.Option.DRAW_CALL_C
          Option indicating whether to fill in the callboxes for calls of nucleotide C.
static ChromatogramGraphic.Option ChromatogramGraphic.Option.DRAW_CALL_G
          Option indicating whether to fill in the callboxes for calls of nucleotide G.
static ChromatogramGraphic.Option ChromatogramGraphic.Option.DRAW_CALL_OTHER
          Option indicating whether to fill in the callboxes for non-base calls (gaps, ambiguities).
static ChromatogramGraphic.Option ChromatogramGraphic.Option.DRAW_CALL_SEPARATORS
          Option indicating whether to draw vertical lines separating the calls.
static ChromatogramGraphic.Option ChromatogramGraphic.Option.DRAW_CALL_T
          Option indicating whether to fill in the callboxes for calls of nucleotide T.
static ChromatogramGraphic.Option ChromatogramGraphic.Option.DRAW_TRACE_A
          Option indicating whether to draw the chromatogram trace for nucleotide A.
static ChromatogramGraphic.Option ChromatogramGraphic.Option.DRAW_TRACE_C
          Option indicating whether to draw the chromatogram trace for nucleotide C.
static ChromatogramGraphic.Option ChromatogramGraphic.Option.DRAW_TRACE_G
          Option indicating whether to draw the chromatogram trace for nucleotide G.
static ChromatogramGraphic.Option ChromatogramGraphic.Option.DRAW_TRACE_T
          Option indicating whether to draw the chromatogram trace for nucleotide T.
static ChromatogramGraphic.Option ChromatogramGraphic.Option.FROM_TRACE_SAMPLE
          Option indicating the lowest (leftmost) trace sample that should be drawn.
static ChromatogramGraphic.Option ChromatogramGraphic.Option.HEIGHT_IS_AUTHORITATIVE
          Option indicating whether height or vertical scale is the authoritative measure.
static ChromatogramGraphic.Option ChromatogramGraphic.Option.HORIZONTAL_NONLINEAR_SCALER
          Option specifying the non-linear scaling function to apply, as embodied in a ChromatogramNonlinearScaler object.
static ChromatogramGraphic.Option ChromatogramGraphic.Option.SEPARATOR_COLOR
          Option indicating the color that the call separators should be.
static ChromatogramGraphic.Option ChromatogramGraphic.Option.SEPARATOR_STROKE
          Option providing the the stroke to use for drawing call separators.
static ChromatogramGraphic.Option ChromatogramGraphic.Option.SUBPATH_LENGTH
          To improve performance, the drawing objects for the chromatogram traces are precomputed.
static ChromatogramGraphic.Option ChromatogramGraphic.Option.TO_TRACE_SAMPLE
          Option indicating the highest (rightmost) trace sample that should be drawn.
static ChromatogramGraphic.Option ChromatogramGraphic.Option.TRACE_STROKE
          Option providing the the stroke to use for drawing the chromatogram traces.
static ChromatogramGraphic.Option ChromatogramGraphic.Option.USE_CUSTOM_STROKE
          Option indicating whether to use custom strokes when drawing traces and separators.
static ChromatogramGraphic.Option ChromatogramGraphic.Option.USE_PER_SHAPE_TRANSFORM
          Option indicating whether to apply scaling and translation transforms to each shape individually or to apply a single transform to the graphics context.
static ChromatogramGraphic.Option ChromatogramGraphic.Option.WIDTH_IS_AUTHORITATIVE
          Option indicating whether width or horizontal scale is the authoritative measure.
 

Methods in org.biojava.bio.chromatogram.graphic that return ChromatogramGraphic.Option
static ChromatogramGraphic.Option ChromatogramGraphic.Option.lookup(java.lang.String desc)
          Looks up an Option instance based on its string description.
 

Methods in org.biojava.bio.chromatogram.graphic with parameters of type ChromatogramGraphic.Option
 float ChromatogramGraphic.getFloatOption(ChromatogramGraphic.Option opt)
          Helper method for converting a Number-valued option into a float primitive.
 int ChromatogramGraphic.getIntOption(ChromatogramGraphic.Option opt)
          Helper method for converting a Number-valued option into an int primitive.
 java.lang.Object ChromatogramGraphic.getOption(ChromatogramGraphic.Option opt)
          Returns the current value for the specified option.
 boolean ChromatogramGraphic.optionIsTrue(ChromatogramGraphic.Option opt)
          Helper method for converting a Boolean-valued option into a boolean primitive.
 void ChromatogramGraphic.setOption(ChromatogramGraphic.Option opt, java.lang.Object value)
          Sets a new value for the specified option.