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Packages that use RestrictionEnzyme | |
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org.biojava.bio.molbio | The classes and interfaces in this package cover common molecular biological techniques such as restriction digests and PCR. |
org.biojava.bio.seq.impl | Standard in-memory implementations of Sequence and
Feature . |
Uses of RestrictionEnzyme in org.biojava.bio.molbio |
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Fields in org.biojava.bio.molbio declared as RestrictionEnzyme | |
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RestrictionEnzyme |
RestrictionSite.Template.enzyme
enzyme RestrictionEnzyme field. |
Methods in org.biojava.bio.molbio that return RestrictionEnzyme | |
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RestrictionEnzyme |
RestrictionSite.getEnzyme()
getEnzyme returns the enzyme which cuts at this
site. |
static RestrictionEnzyme |
RestrictionEnzymeManager.getEnzyme(java.lang.String name)
getEnzyme returns an enzyme by name. |
Methods in org.biojava.bio.molbio with parameters of type RestrictionEnzyme | |
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void |
RestrictionMapper.addEnzyme(RestrictionEnzyme enzyme)
addEnzyme adds an enzyme to be searched for in the
Sequence . |
static Annotation |
RestrictionEnzymeManager.getAnnotation(RestrictionEnzyme enzyme)
getAnnotation returns an immutable, static
annotation describing the enzyme. |
static java.util.regex.Pattern[] |
RestrictionEnzymeManager.getPatterns(RestrictionEnzyme enzyme)
getPatterns returns two Pattern
objects for an enzyme, one matches the forward strand and one
the reverse. |
static java.lang.String |
RestrictionEnzymeManager.getSuppliers(RestrictionEnzyme enzyme)
getSuppliers returns a string describing the suppliers
of this enzyme according to REBASE encoding for commercial sources
or an empty String if the enzyme is not commecially available. |
static void |
RestrictionEnzymeManager.register(RestrictionEnzyme enzyme,
java.util.Set isoschizomers)
register regisiters a new
RestrictionEnzyme with the manager. |
void |
RestrictionMapper.removeEnzyme(RestrictionEnzyme enzyme)
removeEnzyme removes an enzyme from those to be
searched for in the Sequence . |
Uses of RestrictionEnzyme in org.biojava.bio.seq.impl |
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Methods in org.biojava.bio.seq.impl that return RestrictionEnzyme | |
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RestrictionEnzyme |
SimpleRestrictionSite.getEnzyme()
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