ALIGNMENT GLOBAL

 

Global sequence alignment

Program nameDescription
est2genome Align EST and genomic DNA sequences
needle Needleman-Wunsch global alignment
stretcher Finds the best global alignment between two sequences
esim4 Align an mRNA to a genomic DNA sequence
alignrunner Align sequence pairs in a directory
comparator Compare contact scores of two sequence alignments
contactalign Damian Counsell's experimental 2.5-D alignment algorithm
nawalign Damian Counsell's NW implementation
nawalignrunner Nawalign all sequence pairs in a directory
needlerunner Needle all sequence pairs in a directory
scorer Score alignments using structural alignments
scorerrunner SCORER for ordered pairs of substituted seqs
substitute Substitute matches into a template
substituterunner Run SUBSTITUTE on a directory of traces